Halorubrum sp. CBA1229: Hrr1229_012070
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Entry
Hrr1229_012070 CDS
T06658
Symbol
endA
Name
(GenBank) tRNA-intron lyase
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
halq
Halorubrum sp. CBA1229
Brite
KEGG Orthology (KO) [BR:
halq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halq03016
]
Hrr1229_012070 (endA)
Enzymes [BR:
halq01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Hrr1229_012070 (endA)
Transfer RNA biogenesis [BR:
halq03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Hrr1229_012070 (endA)
BRITE hierarchy
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
QKY17587
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Position
complement(2427504..2428700)
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AA seq
398 aa
AA seq
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MQPTGHLRGDAVRVAGDARQRFYDSRGYGRPLDGNEIALSRVEAAHLLFRGDLSGVALAP
DADPVGFERFFVESAAAADRFAVRYLVYSDLRDRGFYLSPAREPWPGGSVGVADAVDFVA
YERGSTPDTGDVKYPVQVVGERESLPADGLAGRTLAVVDEESDITYFAATEGRIEGATDY
DPPDRLDGVLLSDRVVVWDAPEALYERGFYGQPLTGRAAAVEGALQLSLVEAASLAADGV
LSLSASVGTAGGASSEADAERDGPAAEPDGPAAAVVARGRDVEGERFDRRLAVYKRLRAA
DAVPKTGFKFGADFRTYLDVETVEDLPHSEHLVRVVDADHRFSPRELSLDVRLAGGVRKE
MVFALTAVGDDGGDGLGNADDAVRDADVEWLSITRLTP
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgacagggcacctgcgcggcgacgcggtccgcgtcgccggcgacgcccgccag
cgcttctacgactcccgggggtacgggcgcccgctcgacgggaacgagatcgcgctctcg
cgcgtcgaggcggcccacctcctcttccgcggcgacctctccggcgtcgccctcgccccc
gacgccgaccccgtcggcttcgagcggttcttcgtcgagagcgcggcggcggccgaccgg
ttcgcggtgcggtacctcgtctactccgacctccgcgaccgtggcttctacctctcgccc
gcccgcgagccgtggcccggcgggagcgtcggcgtcgccgacgcggtcgacttcgtcgcc
tacgagcgcggctcgacgcccgacacgggcgacgtgaagtaccccgtgcaggtcgtcggc
gagcgcgagtcgctccccgcggacgggctcgccgggcgcaccctcgcggtcgtcgacgag
gagtccgacatcacgtacttcgcggcgaccgaggggcgaatcgagggcgcgaccgactac
gaccccccggaccggctcgacggggtgctcctctccgaccgcgtcgtcgtctgggacgcc
cccgaggccctctacgagcgcggcttctacggccagccgctcaccggccgcgcggccgcc
gtcgagggggcgctccagctctccctcgtcgaggccgcgtcgctcgcggccgatggggtc
ctctcgctgtcggcgtcggtcgggacggcgggcggggcctccagtgaggccgacgcggag
cgagacggccccgccgcggagcccgacggccccgccgccgcggtcgtcgcccgcggccgc
gacgtggagggcgagcgcttcgaccgccggctcgcggtttataaacgcctccgcgcggcc
gacgccgtcccgaagaccggcttcaagttcggcgccgacttccggacgtacctcgacgtg
gagacggtcgaggacctgccgcactccgagcacctcgtgcgcgtcgtcgacgccgaccac
cgcttctcgccccgcgagctgtcgctcgacgtgcggctcgcgggcggcgtccgcaaggag
atggtgttcgcgctgacggcggtcggggacgacggcggtgacggcctcggaaacgccgac
gacgcggtccgcgacgccgacgtcgaatggctctcgatcacgcggttgacgccctga
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