Halorubrum sp. CBA1229: Hrr1229_013210
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Entry
Hrr1229_013210 CDS
T06658
Name
(GenBank) S1 RNA-binding domain-containing protein
Organism
halq
Halorubrum sp. CBA1229
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
S1
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QKY17795
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All DBs
Position
2624005..2626311
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AA seq
768 aa
AA seq
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MGSCIICGVDVDGGGRICDPHQEDVVFDFRGNSPDQLVPDRFYRGVVDGYAEFGVFVDLA
PGVTGLLHRSELDRRLDSLDWEPGDEVFVQVKGVRDNGNIDLAWSIRQADREFRGVLVQD
GDTEYLPEEDGDEDAAEADEAAAADDAAEVEGAAEVEGAAEIEDAAEIEDAAEIEDAAEI
EDAAEIEDATETDDEATESETDDESVDAVSEDADKTAETSETVDATEAAGTDTADKSEAE
AETESGAEAERESEAENETDTESEDDLDDDRERVEIGTLSEAVGDAVRIDGEVVGVRQTG
GPTVFEVRDETGVVDVAAFVEPGVRAYPDVEVGDAVRIDGEVESHRGDVQVESEALVLLE
GEGAETVRRRLAEALTDEARPDGLQPLAGDETVAQLADGLLDAAEALRRAVLESRPIVVR
HPATADGYVAGAAVERAVLPLIRDEHAKSDAEYHYFTRRPLDDPVYGMDAATNDATRMLQ
DRDRHDEKLPLFLLVGTGSTVESADGIDLLSVYGVDAVVVDAEVADPETREAVDTLVSPE
IESVEGDLSTGALVASLASAVNDEVRDDLRHLPAVSYWADTPDRYVDLARDAGYDVERVA
ELREAVALEAYYQSYQDKRELVADLLFEDGGNLAAHVSEQFREKLETEVETATANVVTEA
VDGVEFDVLDTDGYTHRYDFPPTPLLLDDLHRRRVNGEAHATVGIGTDELYLRTSEDVSV
RDVAERAAELAPAADVTTAGLREGKIEFLSGERDAVEDAVVAAVAEAF
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggatcctgtatcatctgtggcgtcgacgtcgacggcggcggtcgcatctgcgacccg
caccaggaggacgtcgtgttcgacttccgcggaaactcccccgaccagctcgtaccggac
cggttctaccgcggcgtcgtcgacggctacgccgagttcggcgtgttcgtcgacctcgcg
ccgggcgtgaccggactcctccaccgctccgagctcgaccggcgtctcgacagcctcgac
tgggagcccggtgacgaggtgttcgtccaagtgaagggcgtccgcgacaacgggaacatc
gacctcgcgtggtcgatccgacaggccgaccgcgagttccgcggcgtgctcgtccaggac
ggcgacaccgagtacctcccggaggaggacggcgatgaggacgcggccgaagcggacgag
gccgccgcggccgacgacgctgccgaggttgagggcgctgccgaggttgagggcgctgcc
gagattgaggacgctgccgagattgaggacgctgccgagattgaggacgctgccgagatt
gaggacgccgccgagattgaggacgccaccgagaccgacgacgaagcgactgaatccgag
accgacgacgagtccgtcgacgccgtgagcgaggacgccgacaaaacggcggagacgagc
gagacggtcgacgcgaccgaggcagcaggcaccgacaccgccgacaaaagcgaggccgag
gccgagaccgagagcggggcggaggccgaaagggagagcgaggccgaaaacgagaccgac
accgagagcgaggacgacctcgacgacgaccgcgagcgcgtcgagatcgggaccctctcc
gaggccgtcggcgacgcggtgcggatcgacggcgaagttgtcggcgtccggcagaccggc
ggccccaccgtcttcgaggtccgggacgagaccggcgtcgtcgacgtggcggcgttcgtc
gagcccggcgtccgggcgtacccggatgtcgaggtcggcgacgcggtgcggatcgacggc
gaggtcgagagccaccggggcgacgtgcaggtcgagtccgaggcgctcgtcctcctcgag
ggcgagggggccgagacggtccgccgccggctcgcggaggcgctcaccgacgaggcgcgt
cccgacgggctccagccgctcgcgggcgacgagacggtcgcgcagctcgccgacggactg
ctcgacgccgcggaggcgctccgccgcgcggtcctcgagtcacgcccgatagtcgtgcgc
caccccgccaccgccgacggctacgtcgccggcgcggcggtcgagcgcgccgtgctcccg
ctgatccgcgacgagcacgccaagagcgacgccgagtaccactacttcacccgacgaccg
ctcgacgacccggtgtacgggatggacgcggcgacgaacgacgcgacccgcatgctgcag
gaccgcgaccgccatgacgagaagctcccgctcttcttactcgtcggcaccggctcgacc
gtcgagtccgcggacggcatcgacctgctctccgtctacggcgtcgacgccgtcgtcgtc
gacgccgaggtcgccgaccccgagacccgcgaggccgtcgacacgctcgtctcgccggag
atcgagtcggtcgagggcgacctctcgacgggcgcgctggtcgcctcgctggcctccgcg
gtcaacgacgaggtccgcgacgacctgcggcacctcccggccgtgagctactgggcggac
accccggaccgctacgtcgacctcgctcgcgacgcgggctacgacgtcgagcgcgtcgcg
gagctccgcgaggccgtcgcgctggaggcgtactaccagtcgtaccaggacaagcgcgag
ctggtcgccgacctcctcttcgaggacggcggcaacctcgcggcgcacgtctccgagcag
ttccgtgagaagctggagacggaggtcgagaccgcgaccgcgaacgtcgtcaccgaggcg
gtcgacggcgtcgagttcgacgtgctcgacaccgacggctacacgcaccgatacgacttc
ccgccgacgccgctcctcctcgacgacctccaccgccgccgcgtgaacggcgaggcgcac
gcgaccgtcggcatcggcaccgacgagctgtacctccggacgagcgaggacgtctccgtc
cgcgacgtggccgagcgcgcggcagagctcgcgcccgccgccgacgtcaccacggccggg
ctccgcgaggggaaaatcgagttcctctcgggcgagcgcgacgccgtcgaggacgccgtc
gtcgccgccgtcgccgaagcgttctga
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