KEGG   Halorubrum sp. CBA1229: Hrr1229_013220
Entry
Hrr1229_013220    CDS       T06658                                 
Name
(GenBank) flap endonuclease-1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
halq  Halorubrum sp. CBA1229
Pathway
halq03030  DNA replication
halq03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:halq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hrr1229_013220
   03410 Base excision repair
    Hrr1229_013220
   03450 Non-homologous end-joining
    Hrr1229_013220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halq03032]
    Hrr1229_013220
   03400 DNA repair and recombination proteins [BR:halq03400]
    Hrr1229_013220
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:halq04147]
    Hrr1229_013220
DNA replication proteins [BR:halq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Hrr1229_013220
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Hrr1229_013220
DNA repair and recombination proteins [BR:halq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Hrr1229_013220
Exosome [BR:halq04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Hrr1229_013220
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-ProteinID: QKY17797
LinkDB
Position
2627173..2628150
AA seq 325 aa
MGNADLRDLAAIRDVAFEDIGGGVVAVDAHNWLYRYLTTTVKWTADEKYTTADGVEVANL
IGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVADRREKRERAEERRAAAQERGDAVEAA
RLEARTQRLTETIQETTRELLSLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLL
FGAPTTLRQLTSKGDPELMELAATLDELGLDRQGLVDVAMLCGTDFNEGVHGVGPKTAVT
AVKEHGDLWGALDARGAEIPNAAEIRELFMNPPATDVDVDADVNPDVDAARAYVVDEWGV
AAEEVERGFERITESQVQTGLDRWS
NT seq 978 nt   +upstreamnt  +downstreamnt
atgggaaacgccgatctacgcgacctcgcggcgatccgggacgtcgccttcgaggacatc
gggggaggcgtcgtcgccgtcgacgcgcacaactggctgtaccggtatctcacgacgact
gtcaagtggacggcagacgagaagtacaccaccgccgacggcgtcgaggtcgcgaacctg
atcggcgtcgtgcaggggctcccgaagttcttcgaacacgacctgatcccggtgatggtg
ttcgacggggccgtcaccgacctgaaggccgacgaggtcgcggaccggcgcgagaagcgc
gagcgggccgaggagcgtcgggcggcggcccaggagcgcggcgacgcggtcgaggctgcc
cggctcgaggcccgcacccagcggctcacggagacgatccaggagacgactcgcgagctg
ctctccctgctcgacgtgccgatcgtcgaggcccccgcggagggggaggcgcagtgcgcg
catatggcggcgacggggacggtcgaccacgccggcagcgaggattacgacacgctgctg
ttcggcgcccccacgacgctccggcagctcacgagcaagggcgacccggagctgatggag
ctcgcggcgaccctcgacgagctcgggctggaccggcaggggctcgtcgacgtcgccatg
ctgtgcggcaccgacttcaacgagggcgtccacggcgtcgggccgaagaccgcggtgacg
gccgtgaaggaacacggcgacctgtggggggccctcgacgcgcgcggcgccgagatcccg
aacgccgcggagatccgcgagctgttcatgaacccgccggcgaccgacgtcgacgtcgac
gcggacgtgaaccccgacgtcgacgccgctcgcgcgtacgtcgtcgacgagtggggcgtc
gcggccgaggaggtcgagcggggcttcgagcgcatcacggagtcgcaggtccagaccggg
ctcgaccggtggtcgtga

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