Halorubrum sp. CBA1229: Hrr1229_014200
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Entry
Hrr1229_014200 CDS
T06658
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
halq
Halorubrum sp. CBA1229
Pathway
halq03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
halq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hrr1229_014200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halq03021
]
Hrr1229_014200
Transcription machinery [BR:
halq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hrr1229_014200
Prokaryotic type
Archaeal type
TFB
Hrr1229_014200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Zn_ribbon_LysW
Sigma70_r4
Anti-TRAP
Cas12f1-like_TNB
A2L_zn_ribbon
Zn_ribbon_tTFIIB
Zn_ribbon_RPB9
YopD
Trm112p
DZR
DZR_2
C1_1
Auto_anti-p27
DUF5795
Motif
Other DBs
NCBI-ProteinID:
QKY17972
UniProt:
A0A7D4YDW2
LinkDB
All DBs
Position
complement(2813680..2814690)
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AA seq
336 aa
AA seq
DB search
MTETRTRDYGGETEQERTTRNRAVETESAEEESTAAERTTTCPECGGSLISDTEHGETVC
DDCGLVVEQDSVDRGPEWRAFNSGERDSKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGKS
LSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPDNVRETASVIYRRA
LSEDLLPGRSIEGVATASLYAAARQVGNPRSLDEFTAVSRVDKMELTRTYRYVIRELGLR
VQPADPESYVPRFVSRLELSEETQRLARELLDGAKESGITSGKSPVGLAASAVYAAALLS
NEKVTQSQVSEVADISEVTIRNRYKELLEASEGVAA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaacacgcacgcgagactacggcggagaaacggaacaagagcgaacgactcgg
aaccgagcggtcgagacggagtcggccgaagaggagtcgacggcggcggagcggaccacg
acctgcccggagtgcggcgggagcctcatcagtgatacggagcacggcgaaacggtgtgt
gacgactgcgggctcgtcgtcgagcaggactcggtcgaccgcgggccggagtggcgcgcg
ttcaactccggcgagcgggacagcaagtcccgcgtcggcgccccgacgacgaacatgatg
cacgacaaggggctctcgacgaacatcggctggcaggacaaagacgcctacggcaagtcg
ctgtccagccgccagcgtcagaagatgcagcggctccgcacctggaacgagcggttccgc
acccgcgactccaaggaacggaatctcaagcaggcgctgggcgagatcgaccgcatggcc
tcggcgctcggcctcccggacaacgtccgcgagaccgcgtcggtcatctaccgccgcgcg
ctgagcgaggacctgctccccggccgctccatcgagggcgtcgcgactgcctcgctgtac
gcggccgcccggcaggtggggaacccgcggagcttggacgagttcaccgccgtctcccgc
gtcgacaagatggagctcacccggacgtaccgttacgtcatccgcgagctcggcctccgc
gtccagcccgctgaccccgagagctacgtcccgcggttcgtctcgcggctggagctctcc
gaggagacgcagcggcttgcccgcgagctcctcgacggcgcgaaggagtccggcatcacg
agcgggaagtcaccggtcgggctcgccgcgtccgcggtgtacgcggccgcgctcctctcg
aacgagaaggtgacacagagccaggtgtcggaggtcgccgacatcagcgaggtcaccatc
cggaaccggtacaaagagctcctcgaagcgagcgagggagtggcggcctga
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