Halarchaeum sp. CBA1220: EFA46_000460
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Entry
EFA46_000460 CDS
T06674
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halr
Halarchaeum sp. CBA1220
Brite
KEGG Orthology (KO) [BR:
halr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halr03016
]
EFA46_000460
Enzymes [BR:
halr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EFA46_000460
Transfer RNA biogenesis [BR:
halr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EFA46_000460
Prokaryotic type
tRNA splicing ligases
EFA46_000460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLC32741
LinkDB
All DBs
Position
92680..94140
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AA seq
486 aa
AA seq
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MTTFDADDVTLEEIEEHVWEIAREDGMNTPARVLASEALLEEIADDDTLGQIRNVTHLPG
VQRHALCMPDGHQGYGFPVGGVAAIDAEDGCISPGGVGFDINCGVRMVKTNLTYDDVRGR
EEELVDALFDAVPTGLGGGGVVNGDAETMSGALSRGLDWAHEAGYATRDDLKHCEDEGMR
PDAEPAKVSQKAKDRGRNQLGSLGSGNHFLEVQRVTDVYRADVADSFGLKADQLVVLIHC
GSRGLGHQVCSDYLRRIEEEYEEFLADLPDDNLAAAPAGSDLAEDYYGAMCAAINFAWVN
RQLITHQVRETFADVFETPWEELGMELLYDVAHNIAKKEVHEVDGEEKELYVHRKGATRA
FPAGHPEVPSAYRDVGQPVIIPGSMGAGSYVLRGGEESMARTFGSTAHGAGRLMSRTQAK
REYRGEDVQSDLQEHEHVYVKAESGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTYP
VVNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgttcgacgccgacgacgtcaccctcgaggagatcgaggagcacgtctgggag
atcgcccgcgaggacggcatgaacacgccggcgcgcgtcctcgcgagcgaggccctcttg
gaggagattgccgacgacgacacgctcggacagatccggaacgtcacgcacctccccggg
gtgcaacgacacgcgctctgcatgcccgacggccaccagggctacggcttccccgtcggc
ggcgtcgcggcgatagatgcggaagacggctgtatcagccccggcggcgtcgggttcgac
atcaactgcggcgtgcggatggtgaagacgaacctgacgtacgacgacgtgcgcggccgc
gaggaggagctcgtggacgcgctcttcgacgccgtcccgacgggcctcggcggcggcggc
gtcgtgaacggcgacgcggagacgatgtcgggcgcgctctcacgcggcctcgactgggcg
cacgaggcgggctacgcgacgcgcgacgacctgaagcactgcgaggacgaggggatgcgc
ccggacgccgagcccgcgaaggtctcgcagaaggccaaggacagggggcgcaaccagctc
ggaagcctcgggtcgggcaaccacttcctcgaagtccagcgcgtcaccgacgtttaccgg
gcggacgtcgccgactcgttcggcctcaaggcggaccagctcgtcgtgctcatccactgt
ggctctcgcgggctcggccaccaggtctgttccgactacctccggcgcatcgaggaggag
tacgaggagttcttggccgacctcccggacgacaacctcgcggccgcgcccgccgggagc
gacctcgccgaggactactacggcgcgatgtgcgcggcgatcaacttcgcgtgggtgaac
cgccagctcatcacccaccaggtgcgcgagacgttcgcggacgtcttcgagacgccgtgg
gaggagctggggatggagctgctctacgacgtcgcgcacaacatcgcgaagaaggaggtc
cacgaggtggacggcgaggagaaggagctctacgtccaccggaagggcgcgacgcgagcg
ttccccgccggccaccccgaggtgccgagcgcgtaccgcgacgtcgggcagcccgtcatc
atccccgggagcatgggcgcggggagctacgtcctccggggcggcgaggagtcgatggcc
cggacgttcggctcgacggcgcacggcgcgggccgcctgatgagtcggacgcaggcgaaa
cgcgagtaccgcggcgaggacgtccagtccgacctgcaggagcacgagcacgtctacgtg
aaggccgagtcgggcgcgacggtcgcggaggaagcccccggcgtctacaaggacgtcgac
gaggtcgttcgcgtgagcgacgaactcggcatcggcgacaaggtcgcgcgcacctacccc
gtcgtgaacatcaagggctga
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