Halarchaeum sp. CBA1220: EFA46_001510 Help Entry EFA46_001510      CDS       T06674                                  Name (GenBank) CDC48 family AAA ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism halr  Halarchaeum sp. CBA1220 Pathway halr04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:halr00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     EFA46_001510  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:halr03019]     EFA46_001510    03009 Ribosome biogenesis [BR:halr03009]     EFA46_001510    04131 Membrane trafficking [BR:halr04131]     EFA46_001510   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:halr04147]     EFA46_001510 Messenger RNA biogenesis [BR:halr03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      EFA46_001510 Ribosome biogenesis [BR:halr03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     EFA46_001510 Membrane trafficking [BR:halr04131]  SNARE   SNARE associated proteins    Others     EFA46_001510  Autophagy   Aggrephagy    Other aggrephagy associated proteins     EFA46_001510 Exosome [BR:halr04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    EFA46_001510 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA AAA_lid_3 CDC48_N CDC48_2 AAA_16 RuvB_N AAA_5 TIP49 AAA_22 AAA_2 AAA_33 AAA_14 nSTAND3 NPHP3_N RNA_helicase AAA_28 IstB_IS21 AAA_lid_PRS2_C Mg_chelatase AAA_7 AAA_18 Parvo_NS1 ATPase ABC_tran DUF815 AAA_17 AAA_3 NB-ARC AAA_24 Sigma54_activat AAA_30 TsaE AAA_11 Vps4_C PhoH SLFN-g3_helicase NACHT IPT KAP_NTPase Motif Other DBs NCBI-ProteinID:  QLC32941 UniProt:  A0A7D5E4I1 LinkDB All DBs Position complement(280658..282883) Genome browser AA seq 741 aa AA seqDB search MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN TDTVRIDGFTRQNADVGIGERVTIRKADAEKADSLVLAPPEEASVQFGSDAAGMVKRQIL KRPVVSRDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVVLITEDTDVELREEPISGFE RTGGGITYEDIGGLQNEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKRED VTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEV GREEILKIHTRGMPLSDDVNLGHLAEETHGFVGADIESLSKEAAMRALRRYLPEIDLDEE DIPPSLIDRMIVKRQDFRGALGEVEPSAMREVLVELPKMSWDDVGGLTDAKKNVQESVEW PLNSPEKFERMGIDPPNGVLLYGPPGTGKTLMAKAVANETNANFISVKGPQLLSKWVGES EKAIRQTFRKARQVSPTVVFFDELDSLAPGRGQDVGNNVSERVVNQLLTELDGLEEMGEV MVIGATNRPDIIDPALIRSGRFDRMVMVGQPDVEGRARILEIHTEDIPLAPDVSLRELAE ITDGYVGSDIASIAREAAIEALREDDSAEEVEMRHFRKAMENVRPTITDDLLDYYADVEE QFKGGNSPGQGRREGGHIGFQ NT seq 2226 nt NT seq  +upstreamnt  +downstreamnt atgaacgaagtccaactcgaggtcgcgaaagcgtacccgaacgactcggggcgcggcatc gcgcgcctcgaccccgacacgctgctgcacctgaagctcagcccgggagacatcatcgag atcgagggcgccgagaccaccgccgcgaaggtctggcgcgccgaccggcaggactggaac accgacaccgtccgcatcgacggcttcacccgccagaacgccgacgtcggtatcggcgag cgcgtcaccatccggaaggccgacgccgagaaggccgactcgctcgtcctcgcgcccccc gaggaggcgtccgtccagttcggctctgatgccgccggcatggtcaagcgccagatcctc aagcgtcccgtcgtctcgcgcgacatcgtccccgtgatgagctccacgaaccacccgttc atgcgctcgccggggcaggccatcccgctcatcgccgtcgagaccgagcccgagggcgtc gtcctcatcaccgaggacaccgacgtcgagctgcgcgaggagcccatcagcggcttcgag cgcaccggcggcggcatcacctacgaggacatcggcggcctccagaacgagatccagcgc gtccgggagatggtcgaactcccgatgaagcacccgcagatcttccagaagctcggcatc gagccgccacagggcgtgctcctccacggcccgcccggcaccgggaagaccctgctcgcg aaggccgtcgccaacgagacgtcggcgagcttcttctccatcgccggccccgagataatc tccaagtactacggcgagtccgaacagcaactccgggagatcttcgaggacgcgaaggac gactcgccctccatcatcttcatcgacgaactcgactccatcgcgcccaagcgcgaggac gtcaccggcgaagtcgagcgccgcgtcgtcgcccagctcctcacgatgatggacggcctc gaaggccgcggccaggtcatcgtcatcgcggcgacgaaccgcgtggacgccgtcgacccc gcgctccggcggccgggtcgcttcgaccgcgagatcgagatcggcgtccccgacgaggtg ggtcgcgaggagatcctcaagatccacacgcgcggcatgcccctcagcgacgacgtcaac ctcggccacctcgccgaggagacccacggcttcgtcggcgcggacatcgagagcctcagc aaggaggccgcgatgcgcgcgctcagacgctatctccccgagatcgacctcgacgaggag gacatcccgccgagcctcatcgaccggatgatcgtcaagcgccaggacttccgcggcgcg ctcggcgaagtcgagccctccgcgatgcgcgaggtgctcgtcgaactcccgaagatgtcg tgggacgacgtcggcgggctcaccgacgcgaagaagaacgtgcaggagtccgtcgagtgg ccgctcaactcgccggagaagttcgaacgcatgggcatcgacccgccgaacggcgtcctc ctctacgggccgcccgggaccgggaagacgctcatggcgaaggccgtcgccaacgagacg aacgccaacttcatctccgtgaagggcccgcagctcctctcgaagtgggtcggcgagtcc gagaaggccatccggcagaccttccgcaaggcccggcaggtcagtcccaccgtcgtcttc ttcgacgagctcgactcgctggctccgggtcgcgggcaggacgtcgggaacaacgtctcc gagcgcgtcgtcaaccagctcctcaccgagctcgacgggctcgaggagatgggcgaggtg atggtcatcggcgcgacgaaccgccccgacatcatcgaccccgcgctcatccgctccggc cgcttcgaccgcatggtcatggtcggccagcccgacgttgagggccgcgcgcgcatcctc gagatccacaccgaggacatcccgctcgcgcccgacgtcagcctccgcgagctcgccgag atcaccgacggctacgtcggtagcgacatcgcgtccatcgcccgcgaagccgccatcgag gcgctccgcgaggacgactcggccgaggaagtcgagatgcgccacttccgcaaggctatg gagaacgtccggcccaccatcaccgacgacctcctcgactactacgcggacgtcgaagag cagttcaagggcggaaactcgcccgggcagggccgcagagaaggcggccacatcggcttc cagtag

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