Halarchaeum sp. CBA1220: EFA46_005245
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Entry
EFA46_005245 CDS
T06674
Name
(GenBank) single-stranded DNA binding protein
KO
K07466
replication factor A1
Organism
halr
Halarchaeum sp. CBA1220
Pathway
halr03030
DNA replication
halr03420
Nucleotide excision repair
halr03430
Mismatch repair
halr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
halr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EFA46_005245
03420 Nucleotide excision repair
EFA46_005245
03430 Mismatch repair
EFA46_005245
03440 Homologous recombination
EFA46_005245
03460 Fanconi anemia pathway
EFA46_005245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
halr03000
]
EFA46_005245
03032 DNA replication proteins [BR:
halr03032
]
EFA46_005245
03400 DNA repair and recombination proteins [BR:
halr03400
]
EFA46_005245
Transcription factors [BR:
halr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
EFA46_005245
DNA replication proteins [BR:
halr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
EFA46_005245
DNA repair and recombination proteins [BR:
halr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
EFA46_005245
MMR (mismatch excision repair)
EFA46_005245
DSBR (double strand breaks repair)
HR (homologous recombination)
EFA46_005245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
OB_MEIOB_N
OB_Ssb-like
DUF5666
SHLD2_OB1
SSB
DUF5818
DUF4131
Motif
Other DBs
NCBI-ProteinID:
QLC33629
LinkDB
All DBs
Position
972257..973687
Genome browser
AA seq
476 aa
AA seq
DB search
MGAIEDTYADLETDEVSLDEFREAVAEKVEQMGGLADEETAAMLLAHELEDGEVNGVADV
TPEMDEAKFVAKVVSVGDLRTFERDDEEAEDGRVLNVEVADETGAIRVSLWDEQAANASE
QLQVGDVLRVAGRPKDGFNGVELSADRVEPDPDTEIDVQIQDAYRVEDLSVGLSDVTLVG
EVLDTDAVRTFDRDDGSQGRVANLSLGDETGRVTVTLWDERTAAVDEFAAGDVVEVVDGY
VRERDGSIELHVGNRGAVEAVDEDVEYVPESTPIADVELDDVADIAGVIRSADPKRTFDR
DDGSEGQVRNVRLQDDSGDIRVALWGEKADRDLGPGDEVLFTDVEIQDGWQDDLEASAGW
RTSIVELADGAMTADEGASQDDQPAGLGAYADGTAPESASGSTDTEDASPSTGESSDDGG
ESVEFTGTVVQARDPLILDDGTETLSVETDADVTLGQTVTVRGTMSDGRLDADEVR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgatagaggatacgtacgccgacctcgagaccgacgaggtctcactcgacgag
ttccgcgaggccgtcgcggagaaggtcgagcagatgggtgggctggcggacgaggagacg
gccgccatgctcctcgcgcacgaactcgaggacggggaggtgaacggcgtcgcggacgtc
accccggagatggacgaggcgaagttcgtcgcgaaggtcgtctccgtcggcgacctgcgg
acgttcgagcgcgacgacgaggaggccgaggacggccgcgtcctcaacgtcgaagtcgcg
gacgagacgggggcgatccgcgtctcgctctgggacgagcaggcggcgaacgcgtcggag
caactccaggtcggcgacgtcctacgcgtcgcgggccgcccgaaggacgggttcaacggc
gtggagttgagcgcggaccgcgtcgagcccgacccggacacggagatcgacgtccagatt
caggacgcctaccgcgtcgaggacctctccgtcggcctctcggacgtgacgctcgtcggc
gaggtgctcgacacggacgcggtgcggacgttcgaccgggacgacggcagtcagggccgc
gtcgcgaacctctcgcttggcgacgagacggggcgcgtcaccgtcacgctctgggacgag
cgcacggcggccgtcgacgagttcgcggcgggcgacgtcgtggaggtcgtggacggctac
gtccgcgagcgcgacggcagcatcgagctccacgtcgggaaccgtggcgccgtcgaggcg
gtcgacgaggacgtcgagtacgtccccgagtcgacgcccatcgcggacgtggagctggac
gacgtcgcggacatcgcgggggtcatccgctcggcggacccgaaacgcaccttcgaccgg
gacgacggctcggaggggcaggtcaggaacgtccgcctgcaggacgactcgggggacatc
cgggtcgcgctctggggcgagaaggccgaccgcgacctcggaccgggcgacgaggtgctg
ttcacggacgtcgagatacaggacggctggcaggacgacctcgaggcgtcggccggctgg
cggacgagcatcgtcgaactcgcggacggcgcgatgacggccgacgagggcgcgagtcag
gacgaccagccggcgggtctcggcgcgtacgcggacggcaccgcgcccgagtcggcgtcg
gggagcacagacaccgaggacgcctcgccgtcgacgggcgagtcgagcgacgacggtggt
gagtccgtcgagttcacgggcacggtcgtgcaggcgcgcgacccgctcatcctcgacgac
ggcacggagacgctgagcgtcgagacggacgcggacgtcacgctcgggcagacggtgacg
gttcgcggaacgatgagcgacggccgcctcgacgccgacgaagtgcgctga
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integrated database retrieval system
