Halarchaeum sp. CBA1220: EFA46_006725
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Entry
EFA46_006725 CDS
T06674
Name
(GenBank) transcription elongation factor Spt5
KO
K15172
transcription elongation factor SPT5
Organism
halr
Halarchaeum sp. CBA1220
Pathway
halr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
halr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
EFA46_006725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halr03021
]
EFA46_006725
03019 Messenger RNA biogenesis [BR:
halr03019
]
EFA46_006725
Transcription machinery [BR:
halr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
EFA46_006725
RNA polymerase I system
EFA46_006725
Messenger RNA biogenesis [BR:
halr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
EFA46_006725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Ribosomal_uL24m-like
DUF6093
KOW4_SPT5
SH3_KIN17_C
KOW2_Spt5
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
QLC33907
UniProt:
A0A7D5HT63
LinkDB
All DBs
Position
1257180..1257617
Genome browser
AA seq
145 aa
AA seq
DB search
MSVYAVKTTASQEQTVASMIANREENEIHAVLAPDALTSYVMVEADNDAVISRVLEEIPH
ARSMVPGESSISEVEHFLSPKPDVEGIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVE
LYEATVPIPVTVRGDQIRVLDSEER
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgtacgcagtcaagacgaccgcgagccaggagcagaccgtcgcgagcatgatc
gcgaaccgcgaggagaacgagattcacgccgtcctcgcgccggacgcgctcacgagctac
gtgatggtggaggcggacaacgacgccgtcatctcgcgcgtgctcgaggagattccgcac
gcccgcagcatggtgccgggcgagtcctccatcagcgaggtcgagcacttcctcagcccg
aaaccggacgtcgagggcatcgcggagggcgacatcgtcgagctcatcgccggcccgttc
aagggcgagaaggcgcaggtccagcgcatcgacgagggcaaggaccaggtcaccgtcgaa
ctctacgaggccaccgtcccgattccggtcaccgttcgcggcgaccagatccgggtgctg
gactccgaggaacgctaa
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