Halocella sp. SP3-1: D7D81_00510
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Entry
D7D81_00510 CDS
T05769
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D81_00510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_00510 (mfd)
Enzymes [BR:
hals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D81_00510 (mfd)
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D7D81_00510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
DUF1465
NAD_binding_9
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZO96596
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Position
complement(112503..116003)
Genome browser
AA seq
1166 aa
AA seq
DB search
MVLNSLFLNNKKIADFLLALNDRQNLMVKGLVNSRLNFFIANIIERLPDNILLVVNDTYH
VEQYYEDLIRFLPEERVLIYPEIEVLPHEQIVEDYKELGSRLKVLQELTIFPDKAKIVIT
TTANLLRTTMPPEAFEKYSLYLKTGQEMNLSKLVSSLAVLGYKRSEMVEEAGEFSVRGGI
VDIYTLSVEKPIRIEFFGDEIDSIRSFDLGSQRSFLELEEIVIPPSREIVFSKDDFNRVV
PFIRKEYQDTIKALKKSGNDEEADYLLDRMNDNLEKLSELNDFPGNQQFLPFFYEPASLL
DYLPEKAGIFINQAGRFWERVRHLDRELMATQATLLEQGSVTPGYRGNFLDINQLIEELS
KYSNILFSSDIASTVSPIDTSKSFLFTTRGVEPYHGKLPLLLDELKKLQDNKYRVMITLN
SRTKVSRLIKYLQEEELLVIKEGDSLKPGEIMVREGSLAEGFIFEDLKLVVFTEKEVFGQ
AQKKKRQRLHDLEEGVNISSFEELSIGDYVVHENHGVGKYTGVETLDIQGKHQDYLVLQY
AGEDKLYVPTEQVNLVQKYIGADQKPPSLYKLGGSEWKKVKQKVKDSVKEMAVGLLELYA
ERETVEGYSFSKDTVWQQEFEEAFPYEETPDQLQAIKDVKQDMEADTPMDRLLCGDVGYG
KTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFVERMKDYPIAIEMISRFRTRSEQK
DVLKRLALGEVDIIIGTHRLLSKDIIFNDLGLLVVDEEQRFGVTHKERLKDFKRNVDVLT
LSATPIPRTLHMALVGVRDMSVIETPPQNRYPIRTHISEFNRELVRDAIRKEIGRQGQVY
FVHNRVEDIEEKADMVKKLVPEARVAVAHGQMNEHKLEKLMMNFYNNDYDVLVCTTIIET
GLDLPNVNTIIVNRAEIMGLAQLYQLRGRVGRSNRVAYAYLLYERDRILPEVAEKRLGAI
KEFTNLGSGFKIAMRDLEIRGAGNLLGPEQHGHIATIGFSLYCKLLENAIEELKGQKDED
KMEVEIKLAVDAYIPDDYITDAKQKIEIYKKIMAVKKEETLSSLIDELIDRFGDPPEVVV
NLINISKIKIAARKLGINKITYNNSYIVCYFASAKDIDPDILFKLIDRHKGKIRIKSGRT
PSLGIKGKDIMFLEKILQDFIVLSGK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgaattctttgtttttaaacaataaaaaaatagctgatttcttattggcctta
aatgacaggcaaaatctcatggttaaggggcttgttaattcacggctgaatttttttata
gctaatataattgagagactacctgataatatacttctggtagtaaatgatacctaccat
gttgaacaatactatgaagacctgattcgttttttgcctgaagaaagggttttgatatac
cctgaaattgaagttctaccacatgagcaaatagttgaggattataaagaacttggtagt
agattaaaggtattacaggaactaacaattttccctgataaagccaaaattgtaataact
actactgccaatttattaaggacgaccatgccacctgaagcctttgaaaaatattcactt
taccttaaaactgggcaggaaatgaatctttctaaattggtttcttctctggctgtactg
ggctataaaaggagtgaaatggttgaggaagcaggtgaatttagtgtgcgtggtggtatt
gttgatatttatactctttctgttgagaaacctatcaggatagagttttttggtgatgaa
attgattcaataaggtcatttgacctgggatcccagcgctcgtttcttgagttggaagag
attgttataccaccatccagggaaattgttttttcaaaggatgattttaatagggtagta
ccgtttattcgtaaggaataccaggatacgataaaagccttgaaaaaatcgggtaatgat
gaagaagctgattatttattagatagaatgaatgataatttagaaaaattatctgaattg
aatgatttccctggcaaccaacaatttttgcctttcttttatgagcctgcttctcttctt
gattatttgccggagaaggcgggaatttttattaatcaggcagggagattctgggaaagg
gttagacaccttgatagagagttaatggcaacccaggctaccttgttggagcaggggagt
gtaacacctggatataggggaaattttctggatattaatcagcttattgaggaattaagt
aaatatagtaatattttattttcttcagatatagctagtacagtatctcctatagatact
agcaaaagctttttatttacgacaaggggtgttgaaccatatcacggtaaacttccttta
ttattagatgaattaaaaaaacttcaggataataagtaccgggtgatgataaccttaaat
tccaggaccaaggtaagtagacttattaaatatctacaagaagaggagctgttggtgatt
aaggaaggggattcccttaaacctggagagattatggtcagggagggaagtctggcagag
ggttttatttttgaggaccttaaattagttgtctttacagaaaaagaggtctttggtcag
gctcagaagaaaaaacggcagcggttacatgacctggaagaaggtgtgaacatctcatca
tttgaagagttaagtattggtgattatgttgttcacgaaaatcatggagtagggaaatat
actggggtagaaactctggatattcagggtaaacaccaggattatctggttttacaatat
gctggtgaagataaattatatgtgccgactgaacaggttaatttagttcaaaaatatatt
ggtgcagaccagaaaccgcctagcttatataaactgggtgggagcgaatggaaaaaggtc
aaacaaaaggtaaaggattcagtaaaagaaatggctgttggtcttctcgaattatatgca
gaacgggagacagttgaaggatatagtttttctaaagatacggtctggcagcaggagttt
gaagaggctttcccttatgaagagacacctgatcagttgcaagctatcaaagatgtaaaa
caggatatggaagctgataccccgatggatcgtttgttatgtggtgatgtaggttatggt
aagacagaggttgcgattcgtgctgcttttaaggctgttatggatggcaagcaaacagcc
gttttggttccgactactatacttgcccaacaacactataatacatttgtagaaagaatg
aaagattatccaattgcaattgaaatgattagcaggtttaggacccgttctgagcagaag
gatgtcttaaagaggctagccctgggagaggttgatataattattgggacacacaggcta
ctatctaaagatattatttttaatgatctggggttattggttgttgatgaagaacagaga
tttggagttacacataaggagcgtttaaaggattttaaaagaaatgtggatgtactgacc
ctatcagcaaccccgataccaaggactcttcatatggctcttgttggggtcagggatatg
agtgttattgaaacaccaccacaaaatagatatccgatcaggactcatattagtgaattt
aatcgcgaattagtacgtgatgctattagaaaagagataggcaggcagggacaggtatat
tttgtacataacagggtagaagatattgaggaaaaggcagatatggttaaaaaattagta
cctgaagccagggttgccgtagcacatggtcagatgaatgaacataaactggaaaaatta
atgatgaatttttataataatgattatgatgtgctggtctgtacaaccattattgagact
ggtcttgacctgccgaatgttaatacaattattgttaatagggctgaaataatgggttta
gctcaattatatcagctgcgcggcagggtagggcgttctaaccgggttgcttatgcctat
ttgttatatgaacgggatcgtattttgccggaggttgctgaaaagcgtttaggtgcaatt
aaggagtttacaaatcttggttctggttttaagattgctatgcgtgacctggaaatcagg
ggtgcaggtaatttattgggtcctgaacaacatggtcatattgctacaattggtttttct
ttatactgtaaactacttgaaaatgcaattgaagaattaaaaggtcaaaaagatgaagat
aaaatggaagttgaaataaagttagcagtagatgcctatatacctgatgattatattaca
gatgcaaagcaaaaaattgaaatatataaaaaaataatggctgttaaaaaggaagagacc
ctcagtagtcttatagatgagttgatagaccgttttggcgatcctccggaggtagtggtt
aatttgattaatattagtaagattaaaattgctgcccgtaaactgggtataaataaaatc
acctataataacagttatattgtatgttattttgcaagtgctaaagatatagatcctgat
atattatttaaattgatagacagacataaaggaaagataagaataaagtcaggaaggaca
ccatctctgggaattaaaggtaaagacatcatgtttttagaaaagatcctacaggatttt
attgttctttctggaaaataa
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