Halocella sp. SP3-1: D7D81_04040
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Entry
D7D81_04040 CDS
T05769
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03420
Nucleotide excision repair
hals03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D81_04040
03430 Mismatch repair
D7D81_04040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_04040
Enzymes [BR:
hals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D81_04040
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D81_04040
MMR (mismatch excision repair)
Other MMR factors
D7D81_04040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
Viral_helicase1
AAA_30
HHH_5
PAH
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZO93826
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All DBs
Position
858917..860962
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AA seq
681 aa
AA seq
DB search
MDLARFLNEEQQKAVKALKGPVLVLAGAGSGKTRALTYRTARLIDNGVDPANILTLTFTN
KAADDMRGKIVKLLGKERIKGMWLGTFHSICLRILRDNLARVNRSEGCLIYDTTDSVDII
EDIILEFGLDDLEYEAKIAYNIIQKAKMELIAPEFLVREYAGENKGSQHYYQILSRIYQE
YERVLVNNNSFDFNDLIKKTIELFGKHPEILREYQNRFKYIQVDEYQDVNHAQYQITSLL
AEPERNIFVVGDDWQGIYGFRGADIRNILEFEKDYPRAEIIKLEQNYRSTNNIISVSNQL
ISNNKQNKEKTAWTKEGDGAPIFLTRAKNPQVEAAYVARRINDLVNHYNYSYKDITVLCR
TNFQSHYIQQVFPRSHIPYQLIGGVSFFDRQEIRYFINYLRLLVNPEDGLALKRLFRIEA
DGVGDVLLSEINRYAREHKIQVADVLADPTRVKGIGEKKAANLIEFKLRVLDGIRGLRKM
KMPFPRKVLQLYELIDFENNVINELGNTAERLKYINFFMEDIYNYHKYNPGSTLYDYLLI
NELLGGQDELEEDNTDSVKVMTAHSAKGLEFPVVFIIAVEEDVFPHQKSLEEAAAGSNPY
AVEEERRLLYVAMTRAKKILFMSFSQRKSGNNGEEKEVKPSRFLYELSVERMDLSSVDIL
RKSRRLQFKKDPTILKKKLKT
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggatttagctagatttttaaatgaggaacagcagaaagccgttaaggctttaaaaggg
cctgtgctggtattggctggagcagggagtggtaaaacaagggcactaacatacagaacg
gccaggcttattgataatggtgttgatcccgctaatattttaacccttacctttacaaat
aaggcggcagatgatatgagagggaaaatagttaagcttcttggtaaagaaaggattaag
ggaatgtggttgggaacctttcacagtatctgcctcaggattttgagggataatttagcc
agggtgaacaggagtgaagggtgtcttatttacgataccactgattcagttgatattatt
gaagatataatactggagtttggcctggatgatctggagtatgaggctaaaatagcctat
aatataattcaaaaggctaaaatggaattaatagcccctgaatttctggtaagggaatat
gccggggaaaataaaggctcccaacactattatcaaatacttagcaggatatatcaagag
tatgaaagagtactggtcaataacaattcctttgacttcaatgacctgattaaaaagaca
atagaattgttcggtaaacaccctgagatattaagggaatatcaaaacaggtttaaatat
attcaggtagatgaataccaggatgtaaaccatgctcagtatcagattaccagtctgctg
gcagagccggagagaaatatatttgtggttggtgatgactggcaggggatatatggtttt
cggggagctgatataagaaacatactggaatttgaaaaagattatccccgggctgagatt
attaaattagagcagaattatcgaagtacaaataatattataagtgtttctaaccaattg
ataagtaataataaacaaaataaagagaaaaccgcctggacaaaagaaggggatggtgcc
cctatatttttaaccagagccaaaaatccacaggtagaggctgcttatgtggctagaaga
attaatgatctggtaaatcactataattatagttacaaggacattactgttctctgtaga
accaattttcagtctcattatattcagcaggtctttccacgttcacatataccttatcag
ctgattggtggtgttagcttttttgatcggcaggaaataagatattttattaactatctt
aggctcctggttaaccctgaggacggtcttgccctgaaacgcttattcagaattgaagca
gatggggtaggtgatgtccttttaagtgagattaatagatatgcccgtgaacacaagata
caggttgctgatgtcctggctgacccaacaagggtgaaaggtattggagagaaaaaagct
gctaatctaatcgagtttaaattaagggttcttgatggaattagggggcttcgtaagatg
aaaatgcctttcccccgtaaagtacttcaattatatgaactgattgattttgagaataat
gttattaatgagctggggaatacagcagagcgcttaaaatatattaatttttttatggaa
gacatttacaattaccataaatataatccaggtagtaccttgtatgattatctattgata
aatgaactcctgggcgggcaggatgaactggaagaggataatactgatagtgttaaggtg
atgactgctcattcggccaagggtttagagtttccggtagtgtttattatagcagttgaa
gaggatgtttttccacatcagaagagcctggaagaggctgctgcgggtagcaacccttat
gctgtggaagaagaaaggcggcttttgtatgtggctatgaccagggcaaaaaagatatta
tttatgagtttttcacagcgcaagagtggtaataatggggaggaaaaggaagtaaaaccc
tccagatttctttatgaactatcagtggaaaggatggatcttagtagtgtagatatactt
agaaagagtagaagactacaatttaaaaaagatcctactattctgaaaaaaaaactaaaa
acttga
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