Halocella sp. SP3-1: D7D81_05560
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Entry
D7D81_05560 CDS
T05769
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
hals
Halocella sp. SP3-1
Pathway
hals03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D81_05560 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_05560 (uvrB)
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D81_05560 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D7D81_05560 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
DUF87
DUF1131
nSTAND_NTPase5
AAA_7
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AZO94102
LinkDB
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Position
1167485..1169503
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AA seq
672 aa
AA seq
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MQAKDFVLHSPYEAKGDQPQAINKLVEGIKKGYRHQTLLGATGTGKTYAMAAVIEKVNKP
TLVIAHNKTLAAQLTSEFKEFFPENTVGYFVSYYDYYQPEAYVPQTDTYIEKDSSVNEDI
DKLRLSATSSLFERRDVLIVASVSCIYGLGNPADYLDLSCTLKVGHLKDRKEILRDLAVM
QYSRNDLDLSRGHFRVKGDVIEVFPAYDDLAIRIELFGDEIDRITKIDTLTGEVLGEYQE
VTIYPASHFVTPEDKIKKAVRTISKELEERLNELEKDHKLVEGQRLKQRTSYDLEMLSQM
GFCSGIENYSRHLAGRPAGSRPDTLLDYFPENDFLVMIDESHMTIPQIGGMYAGDRSRKE
KLVEYGFRLPSALDNRPLNFKEFEKLVPQAIYVSATPGPYEQEHSQQVVEQIIRPTGLLD
PEVEVRPIEGQIDDLLSEIKIVIERNERVLVTTLTKRMSEDLTEFLAGAGVKVRYLHSDI
DTIERSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVQGKVIMYADTITGSMARAIEETNRRREIQEEFNRKNGIKPETIVKPVREVLRPV
DMVVSEEKKNTYNTKYDEDKAELSSNEIRHLIIDLENEMKEAADNLEFELAAQIRDEIKE
YEEELGNKKKKK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctaaagattttgtcttacattcaccatatgaggctaaaggggatcagcctcag
gcgattaataagttggttgaagggattaaaaagggttaccggcatcagacgctactgggg
gctacaggcacaggtaaaacctatgccatggctgctgtaatagagaaggtaaataagcct
accctggttattgcccataataagaccctggctgctcagctgacaagtgaatttaaggaa
tttttcccagaaaatacagtcggttattttgtcagttattatgattattaccaaccagag
gcctatgtgccacagactgatacctatattgagaaggattcatctgttaatgaggatatc
gataaactgcgtttgtcggcgaccagttcactctttgagcgccgggatgttttgatagtt
gccagtgtttcctgtatatatggtcttggtaatccggctgattacctggacctatcctgt
actcttaaggtggggcatcttaaagataggaaagagatattgagagacctggcagtgatg
cagtacagccggaatgaccttgaccttagtagaggtcatttcagggtaaagggtgatgta
attgaggtttttcctgcctatgatgacctggcaattaggatagaattatttggtgatgaa
atagatcgtattactaaaatagatactctgacaggtgaggtgctgggtgagtatcaggag
gtaactatctacccggccagtcattttgttacccctgaggataagataaaaaaggcagta
aggactatcagcaaagaactggaagagaggttaaatgaactggaaaaggatcataaactg
gttgaaggccagcggcttaaacagaggacaagttatgacctggaaatgctgagtcagatg
ggtttttgttcggggatagagaattattcacgccatctggcaggtcgaccggcaggttcc
agacctgatacattactggattattttccggagaacgattttctagtaatgatagatgag
tcccatatgaccatacctcagattggtggtatgtatgctggggacaggtcccggaaagaa
aaactggtagaatatggttttcgcctcccctcagcccttgataatcggcccttgaatttt
aaggaatttgaaaaattggttccccaggctatttatgtctccgctacccctggaccttat
gaacaggaacacagccaacaggttgttgaacaaataattcgaccaactggtttgcttgac
cctgaagtagaggttcgtcctatagagggccagatagatgacctccttagtgagataaag
atagttattgagaggaatgaacgggtactggttactactttaactaaacggatgtctgag
gatttaactgaatttctggctggtgccggggttaaagtccgctatctccactctgatata
gataccattgagcgttcggagataatcagggacttacggcttggtaaatttgatgtcctg
gtaggtattaacctcctgcgggaagggctggatttgcctgaggtttccctggtggctatc
ctggatgcagataaggaagggttccttcgttctgaacgttctttaatccagactatcggc
cgggcggcccgtaatgtacagggaaaggtaatcatgtatgctgatactattactggttca
atggccagagctattgaagagacaaataggaggcgggagattcaagaggaatttaataga
aagaatggaattaaacctgaaacaattgttaaaccggtcagggaggtactgcgccctgtt
gacatggttgtcagtgaagagaagaaaaatacctataatacaaaatatgatgaagataaa
gcagagctctcgtcaaatgagatcaggcatttaattattgacctggaaaatgagatgaag
gaagcagctgataatcttgaatttgaactggctgcccagattcgtgatgagattaaggaa
tatgaagaggaattgggaaataaaaagaagaaaaaatga
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