Halocella sp. SP3-1: D7D81_05985
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Entry
D7D81_05985 CDS
T05769
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D81_05985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hals03019
]
D7D81_05985
Messenger RNA biogenesis [BR:
hals03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7D81_05985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
M16C_assoc
Motif
Other DBs
NCBI-ProteinID:
AZO94182
LinkDB
All DBs
Position
complement(1249154..1250845)
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AA seq
563 aa
AA seq
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MTDNKKISVISLGGRGEVGKNMIVVENEEDMIVLDTGTLFPDDEKYGVDLIIPDISYLEK
NQKKLRGIIFSHGHEDHIGAIPYLLEKINPPLYGTDLTIGLIKDRLENNGLIDKANLNTI
GSNIINKDLELGSFKIEFCHVNHSIPASAAMGIHTPAGLIIYTGDYKFDQTPINNPQTDY
DKLASWGRQGVLALLGDSTNAEHEGHTLSERVVARSLEESFSLVESRIIIATFSSNIDRI
QQILKAAKKNNRKIAISGRSMANTIEIASKLAYLDIPEGMIISINEANKMKPEEIVLLMT
GSQGEYRAALSRLARNEHREISIIPGDTVYLSSSPIPGNEKAIGETINMLYSKGAKVIYN
GMIDLHASGHACQEEIKLMINLTKPKYLIPVHGEFRHLYHHAQLARQVGIPVGNIIIALN
GDRVEISPDKAAVTGKVAVGELYIEGYQISKTDELVLTERRKLSENGFINIILAVDQKLN
LYSRPLLISRGFIYKNELQAVLNDAEEIVVKALQTLRSDKNKSSDPSLLKNRINSILGKY
FYEKTNRSPLIITELLIIKNTNN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacagataacaaaaaaatctcagtaatatcactcggtggacgtggtgaagtcggcaaa
aatatgattgtagttgaaaatgaagaggacatgatagtattggataccggtaccctattt
ccagatgatgaaaaatatggtgttgacctgattattcctgatatatcatatctggagaaa
aaccaaaagaaactgcgtggtattattttttcccacggacatgaagaccatattggcgcc
ataccctacttattagaaaaaataaatccccctttatatggcacagatttaacaataggt
ctaataaaagaccgcctggaaaataatggtttaattgacaaagccaatctcaatactatc
ggttccaatataattaataaagacctggaactgggttcttttaagattgagttttgtcat
gttaatcatagcataccagcaagtgcagccatggggattcatactccagcaggattaatc
atttatacaggtgattataaatttgatcaaacaccaattaataatccccagacagattat
gataaactggctagctggggccgacagggagtactggcccttttaggagacagtacaaat
gcagaacatgaaggccataccctctctgaacgggtagtagcccgtagtctggaagaaagc
tttagtctggtagagtccagaataataatagccaccttttccagtaatatcgaccggatc
cagcagatattaaaggcagctaaaaaaaacaacagaaaaatagctattagtggtaggagt
atggccaatacaatagaaatagccagtaaacttgcttacttagatatccctgagggtatg
attataagtattaatgaggccaacaaaatgaaacctgaagaaatagttttgcttatgaca
ggtagtcagggggaatatagagcagccttaagtagattagcccgtaatgaacacagggag
atttctattatacctggtgatactgtatacctatcatccagcccaatacccggtaatgaa
aaggcaattggtgaaactatcaatatgttatacagtaagggggccaaggtaatctacaat
gggatgattgacctacacgcttccggccatgcctgtcaggaagagatcaaattaatgatt
aacctgaccaaaccaaagtacttaattccagttcacggtgaatttcgacatttatatcac
catgcccaactggcaagacaggtgggcataccagtaggaaatatcatcattgccctcaac
ggtgacagggtagagataagccccgataaggcagcagtcaccggaaaagtagctgttggt
gaattatatattgagggttatcaaattagtaaaacagatgagcttgttctcactgaacga
aggaaattatctgaaaatggttttataaatattatcctagctgttgatcaaaaactcaat
ttatacagcagaccccttttaatctccaggggatttatctataaaaatgaattgcaggct
gtccttaatgatgccgaagaaatagtagttaaagccctgcagaccctaagatcagataaa
aataaaagcagtgatccctcactactaaaaaatagaattaatagtatcctaggtaaatac
ttttacgaaaaaacaaatagaagccccttaataataacagaattactaatcataaaaaac
actaataattaa
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