Halocella sp. SP3-1: D7D81_08490
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Entry
D7D81_08490 CDS
T05769
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03420
Nucleotide excision repair
hals03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D81_08490
03430 Mismatch repair
D7D81_08490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_08490
Enzymes [BR:
hals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D81_08490
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D81_08490
MMR (mismatch excision repair)
Other MMR factors
D7D81_08490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_22
AAA_12
DUF7075
nSTAND3
NACHT
Motif
Other DBs
NCBI-ProteinID:
AZO94623
LinkDB
All DBs
Position
1788326..1790554
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AA seq
742 aa
AA seq
DB search
MIKLRSGQIEVADFRQGYMAVPAVPGAGKTTVLAYLAANLIEEGWTGKGKILIVTYMNSA
VSNFRAKIGDYLAERGLSRNRGYEVRTLHSLALNILKEKPEFLLINDQFNIIEPALRGRL
IKQLIEEWIRDNSRTFLKYFDYDPNSQGYQLAVKRWKEDHFPALIKAMIGQFKLHGLNRD
QVSELRRNYRQNSYLDWAFSIYINYDRIMHKQGLLDFDDLAMQALHLLEKDQQLLARMQE
KYSYVFEDEAQDSNLLLGKILSLLAGKKGNLVRVGDSNQAIMGTFTNADPQIFRNFTARN
DIAKRSILYSSRSSQEIIKLANYLVKWTVNDHPQQECKEALEEKYIYPVAADDPYPNPQT
DGYTIANKVFNTSRDEMKNVTRLAARHVQENPENTVAILVPANYIMEEIIEELEEQGVKY
ESLNEPLQEKLKTIEDFKRVLYYLAEPNRQKVLIEILKEVLLIDYLEEGKDLDFLDQLSE
KYSVEEIVYPIGGSVRFQEYARGIVSGEMLAELVKALNRLRLWIDASVELPPDELILLIA
EQLRLKEEELAVAQNIALQIKAELDSNPHWKLHEIADELPRLENSFRQFARKIYERKGYE
PQAGVITITTFHKSKGLEWDTVYITYLTNDNFPSSVEDKFRSEYYYLEDDYSNPVANAKA
SLENLIYDRESVDPQQEANIEFIKERLRLLYVAITRAKKNLLLTAHREIIYDNGDSKQVK
PARPFLALSNFIDKEREAYAQH
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgattaaactacggtcgggacagattgaagttgctgacttccgtcagggttatatggct
gtgccggctgtacctggtgccggtaagactacagttttagcctatctggctgctaatctg
atcgaagaagggtggacggggaagggtaagatattaattgtaacctatatgaattcagcg
gtctccaatttcagagcaaaaataggtgattatctggcagaacggggtctatccagaaat
agggggtatgaagtccggactttacattcactggccctgaatatcttaaaagaaaaacct
gaattcttattgatcaatgatcaatttaatatcatcgaacctgccctgagaggtagatta
attaagcagttaattgaagagtggatcagggataatagcagaacatttttgaagtatttt
gattatgatcctaatagccagggttatcaactggcagttaaacgctggaaagaagatcat
ttccccgccttaattaaagctatgatcggccagtttaaactacacgggctaaaccgcgac
caagttagtgaacttagaagaaattatcggcagaatagctatctggactgggctttttcc
atttatataaattatgatcggattatgcacaagcagggtttactggattttgatgacctg
gctatgcaggccctgcatctattagaaaaggatcagcagttactggccaggatgcaggag
aaatatagctatgtctttgaagatgaggcccaggattccaatctactattagggaaaata
ctctccttactggccggaaaaaaagggaatctggtcagggtgggtgattccaaccaggct
atcatgggtacctttactaacgcagatccccagatattcaggaattttactgccagaaat
gatattgctaaacgttcgatcctctattccagtagaagtagtcaggagattatcaaactg
gccaattatttagttaaatggacagtaaatgatcacccccagcaggaatgtaaagaggcc
ctggaagaaaaatatatctatccggtagcagctgatgacccctatcccaatccgcagaca
gatggttatactattgccaacaaagtttttaacacttcccgggatgaaatgaagaatgtc
acccgtttagctgcccggcatgttcaagaaaatcctgagaatacagtagctattctggta
ccggccaattatattatggaggaaattatcgaggagctggaagagcagggtgttaaatat
gagagtttaaatgaaccgctgcaggaaaaattgaagactatcgaggattttaaaagggta
ctttactatctggctgaacccaatcggcagaaagtcttaattgagatcctaaaagaggtc
ttattaatagattatctggaagagggaaaggacctggattttcttgaccagctctctgaa
aaatatagcgtcgaagaaatcgtctatccaatagggggttctgtgcgtttccaggaatat
gcccgggggattgtctcgggagagatgctggctgaactggtaaaagctctgaaccggctc
aggttatggatcgatgccagtgtggaattaccccctgatgaacttattttactaatagct
gaacagctgagattaaaggaagaggaactggctgtagcccagaatatagctctgcaaatc
aaggccgagctagatagtaatccccactggaaactccacgaaattgctgatgaattaccc
cggctggaaaattcctttcgtcagtttgccagaaagatttatgaacggaagggctatgaa
ccccaagctggtgttataactatcactacttttcataaatcgaaaggactggagtgggat
acggtctatatcacttatctgaccaatgacaatttcccctcatctgttgaggataaattc
cgttctgaatattattatttagaagatgattatagtaatccggtggcaaatgctaaggcc
agtctggaaaatctaatttatgaccgagaaagtgttgatccacagcaggaagctaatata
gagtttatcaaggaacgactgcgtttgttatatgttgctatcaccagggctaaaaagaat
ctgctcttaactgcccaccgcgagattatttatgacaatggggacagtaaacaggtcaaa
ccagctagaccatttttagcactaagtaactttattgataaggagagggaagcctatgct
cagcactaa
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