KEGG   Halocella sp. SP3-1: D7D81_12895
Entry
D7D81_12895       CDS       T05769                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
hals  Halocella sp. SP3-1
Pathway
hals02024  Quorum sensing
hals03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hals00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D7D81_12895
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D7D81_12895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hals03019]
    D7D81_12895
   03036 Chromosome and associated proteins [BR:hals03036]
    D7D81_12895
Messenger RNA biogenesis [BR:hals03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     D7D81_12895
Chromosome and associated proteins [BR:hals03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    D7D81_12895
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: AZO95417
LinkDB
Position
complement(2679094..2679324)
AA seq 76 aa
MKQQLNLQDNILNAVRKKKIGVTIFLMNGYQLNGMVAGFDNFTIILKNDKKTQMVYKHAI
STIIPQEEIEDIFKVE
NT seq 231 nt   +upstreamnt  +downstreamnt
atgaaacaacaactaaatctacaggataatattttaaatgctgtgaggaagaaaaagata
ggggttaccatttttctaatgaatggctatcaacttaatggtatggttgctggttttgat
aacttcactattatattaaaaaatgacaaaaaaacacaaatggtatataagcatgcaatt
tcaactattattcctcaagaagaaattgaagacatatttaaagtagaataa

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