Halocella sp. SP3-1: D7D81_17605
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Entry
D7D81_17605 CDS
T05769
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03420
Nucleotide excision repair
hals03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D81_17605 (pcrA)
03430 Mismatch repair
D7D81_17605 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_17605 (pcrA)
Enzymes [BR:
hals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D81_17605 (pcrA)
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D81_17605 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
D7D81_17605 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
CarD_TRCF_RID
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AZO96263
LinkDB
All DBs
Position
complement(3663497..3665671)
Genome browser
AA seq
724 aa
AA seq
DB search
MDDDVILKGLNPEQQKAVEHLNGPLLVLAGAGSGKTRVLTRRIAYLIDHYRVSPYNILAV
TFTNKAAEEMKERVASLLDSLGGTIWVSTFHSFCVRILRRDITKIGYSDNFVIYDTSDQK
TVVKGVFKELNIDPKRTKPAAVLAEISHAKNELISVEEYQAGSGDYFSQISAPVYQRYQD
RLKENNALDFDDLIMKTVDLFREYPLVLEHYQERFKYISVDEYQDVNTAQYQLVHLLAAK
YRNLCVVGDPDQGIYGFRGADIKNILNFEKDYTDTKIIKLEQNYRSKEKILEAAHSVIAN
NISRKEKKLWTDRGEGEDINLYVAQNEKDEASYICKSIGELLERGYNYGDIAILYRTNAQ
SRALEDSLVKYAIPYQIIGGLRFYDRMEIKDILAYLRVIYNSDDDISLQRIINRPKRGIG
DGTIAKLERYASEQGISLYQAGLRAEEITDLTGAYQKRVKNFFSMMEEFREYAGENTVDR
LTDKILKETSYKGQLEKQGTVEAKTRLENIQELFSVMQEFLNNGEDNSLAGFLEEVSLIS
DVDTMEDTEQFIVLMTFHAAKGLEFPVVFMIGMEEGIFPHANSMFEVEGIEEERRLCYVG
ITRAMEKLYLSRARERMRFGEYQANPPSQFLQEIPDELLIERDSIFNIDKVDEDPSNDKV
VSTDKNRHAAKRQNYKVGDRVLHPKWGIGEVLEINNERSLELKIKFSRGKARTLLAEYAP
IQKV
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtggatgatgatgtaattttaaagggattgaatccagaacagcaaaaggcagtagaacac
cttaatggtccactacttgtcctggccggtgcgggaagtggtaaaacaagggttttgacc
agacggatagcctatcttattgatcattatagagtgtctccctataatattttagcagta
acctttaccaataaggctgctgaagagatgaaagaaagggtggctagtttactggacagt
ctaggggggactatctgggttagtacttttcactccttttgtgtaaggatactccggcgt
gatattactaaaattggttatagtgataattttgttatctatgatacctctgatcagaag
acagttgtgaagggtgtttttaaggagttaaatattgaccccaaaagaactaaaccagcc
gctgtactggctgagattagccatgctaaaaatgaacttatctctgtagaagagtatcaa
gcgggttcaggggattatttcagtcagatttcagcccctgtctaccagcgttaccaggat
agattaaaggaaaacaatgccctggattttgatgacctgattatgaaaactgttgattta
tttagagaatatcccctggtgctggagcattatcaggagaggtttaaatacatttcggtt
gatgaatatcaggatgttaatactgcccaataccaactggtgcatttgctggcagcaaaa
tatagaaatctatgtgtggtaggtgaccctgaccaggggatttatggtttccgcggtgct
gatattaaaaatatcctgaactttgaaaaagactatactgatacaaaaattattaaattg
gaacagaattaccgctctaaggaaaagatacttgaagcagctcacagtgtaattgctaat
aatatctcccgtaaagaaaagaaactatggacagacaggggagaaggagaagatataaat
ctctatgtggcccaaaatgagaaggatgaggcgtcatatatctgtaaatctattggggaa
ttattagagaggggttataattatggagatattgctattttatacagaactaatgcccag
tcaagggctttagaagattctttagttaaatatgctataccatatcagattattgggggc
ttacgtttttatgaccgaatggagattaaggacatattggcctatttaagggtaatttat
aactcggatgatgatattagtctacagaggattattaatcgacccaaaaggggtattggt
gatggaacaatagcaaaacttgagaggtatgcctcagagcaggggataagcctttaccag
gctggtctaagggctgaggagattacggatttaacaggtgcttatcagaaacgggtaaaa
aatttcttttctatgatggaggagttcagggaatatgccggggagaatactgttgatagg
ttaacagataagattttaaaagagacatcctataagggccaactagaaaagcaggggaca
gttgaagcaaaaacacggttggaaaatatccaggagcttttttcagtgatgcaggagttt
ctaaataatggtgaggataatagtctggcagggtttctggaagaggtgtcattaatatct
gatgttgacactatggaagatacagagcagtttattgtcttaatgacatttcatgctgct
aagggtttagaattcccggtggtatttatgataggtatggaagagggtatcttcccacat
gccaattccatgtttgaggttgagggcattgaggaagaaaggaggctctgttatgtaggt
attaccagggcgatggagaaattatatctgagtagggccagagagaggatgagatttggt
gagtatcaggcaaatcccccttctcaattcctgcaggaaattcctgatgaattattgatt
gaaagggactcaatctttaatattgataaggttgatgaggatcctagtaacgataaagtt
gtaagtactgataaaaatagacatgctgctaagcggcaaaactataaggttggggacagg
gtgcttcatccgaaatggggcattggggaagttctggagataaacaatgaacgttcactg
gaattaaagataaagttttcccgtgggaaggccagaactcttctggctgaatatgcccct
atacaaaaagtttaa
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