Ruania alkalisoli: IM660_04180
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Entry
IM660_04180 CDS
T06878
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
halt
Ruania alkalisoli
Pathway
halt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
IM660_04180
09124 Replication and repair
03420 Nucleotide excision repair
IM660_04180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halt03021
]
IM660_04180
03400 DNA repair and recombination proteins [BR:
halt03400
]
IM660_04180
Enzymes [BR:
halt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM660_04180
Transcription machinery [BR:
halt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
IM660_04180
DNA repair and recombination proteins [BR:
halt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
IM660_04180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOR71496
UniProt:
A0A7M1SV86
LinkDB
All DBs
Position
complement(991635..993284)
Genome browser
AA seq
549 aa
AA seq
DB search
MPDGPLIVQSDKSLLLEVDHEQAGACRRAIAPFAELERAPEHIHTYRLTPLGLWNARAAG
HDAEQVVDTLIQYSRYPVPHALLVDIAETMSRYGRLQLMEHPTHGLVLHALDVPVLTEVL
RSKRTAGLVGAKVDETTVVVHPSERGHLKQVLVKLGWPAEDLAGYVDGEKHAISLNTGDW
SLRPYQEEAVETFWHGGSGVVVLPCGAGKTLVGAGAMAQSGTTTLILVTNTVSARQWRDE
LVRRTSLTAEEIGEYSGSRKEIRPVTIATYQVLTTKRKGAYPHLDLLDARDWGLIVYDEV
HLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIESQGYIAP
ADCTEVRLDLPHSDRMAYAMAEPEDRYRLAATASAKTAVVRELLKKHAGEQTLIIGQYID
QLTELSEALDAPVITGSTTVPERQRLFEAFRTGELTTLVVSKVANFSIDLPEAAVAIQIS
GSFGSRQEEAQRLGRVMRPKADGRTAHFYAIVTRDTVDQDFAAHRQRFLAEQGYAYTIVD
AVDLLGSGA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatggccccctgatcgtccagtccgacaagtccctgctgctcgaggtcgaccac
gagcaggctggcgcgtgccggcgcgccatcgccccgttcgccgaactcgaacgcgcaccc
gagcacatccacacctaccggctcaccccgctggggctgtggaacgcccgcgccgccggc
cacgatgccgagcaggtggtcgacaccctcatccagtactcgcgctacccggtgccgcac
gccctgctggtcgacatcgccgagacgatgtcccggtacgggcggctgcagttgatggag
caccccacccacgggctcgtgctgcacgcgctggacgtgcccgtgctcaccgaggtgctg
cgctccaagcgcaccgccggcctggtgggcgcgaaggtcgacgagacgaccgtcgttgtg
cacccgagcgagcgcggccacctcaagcaggtgctcgtcaagcttggctggccggccgag
gatcttgccggctacgtcgacggcgagaagcacgccatctccctcaacaccggtgattgg
tcactgcgcccctaccaggaagaggcggtggagaccttctggcacggcggaagcggcgtc
gtcgtgcttccctgcggggcgggtaagacgctcgtaggggccggggcgatggcccagtcc
ggcaccaccaccctgattctggtgaccaacaccgtcagcgcccggcagtggcgcgatgaa
ctggtgcgccgcacctccctgacggcggaggagatcggtgagtactccggctcccgcaag
gagatccggccggtcaccatcgccacctaccaggtgctcaccaccaagcggaagggcgcc
tacccgcacctggacctgctcgacgcccgcgactggggcctcatcgtctacgacgaggtg
cacctgctgcccgcaccgatcttccgcatgacggcggacctgcaggcccgcaggcgcctc
ggcctgaccgccacgctggtacgcgaggacgggcgcgaggacgaggtcttctccctcatc
ggccccaagcgctacgacgccccatggaaggacatcgagtcccagggctacatcgccccc
gccgactgcaccgaggtacgcctcgacctaccgcactcggaccggatggcgtatgcgatg
gccgaaccggaggaccggtaccggctggctgcgacggcatcggcgaagacggcggtggtg
cgcgaactgctgaagaagcacgccggggagcagacgctcatcatcggccagtacatcgac
cagctgaccgagctcagcgaggcgctggacgctccggtgatcaccggcagcaccaccgtg
cccgagcggcagcggctgttcgaggcgttccgcaccggtgagctgaccacactcgtggtg
agcaaggtggcgaacttctccatcgacctgcccgaggcggcggtggcgatccagatctcc
gggtcgttcggctcccgtcaggaggaggcgcaacgcctgggccgggtgatgcgacccaag
gccgacgggcggaccgcgcacttctacgccatcgtcacccgcgacaccgtggatcaggac
ttcgccgcccaccggcagcggttcctcgccgagcaggggtacgcctacacgatcgtggac
gcggtggacctgctggggtcgggggcctga
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