Ruania alkalisoli: IM660_17885
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Entry
IM660_17885 CDS
T06878
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
halt
Ruania alkalisoli
Pathway
halt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM660_17885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halt03019
]
IM660_17885
03400 DNA repair and recombination proteins [BR:
halt03400
]
IM660_17885
Enzymes [BR:
halt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM660_17885
Messenger RNA biogenesis [BR:
halt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM660_17885
DNA repair and recombination proteins [BR:
halt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IM660_17885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_16
RecQ_Zn_bind
DUF5817_CT
Motif
Other DBs
NCBI-ProteinID:
QOR70436
UniProt:
A0A7M1SSB3
LinkDB
All DBs
Position
4008007..4010079
Genome browser
AA seq
690 aa
AA seq
DB search
MTSTAEFLAATIRSVAGPEAAPRPDQERAVTELVDHGRRVLVVQATGWGKSAVYWGATAA
LRSRGAGPTLVVSPLLALMRDQIAAAERAGLHAATINSTNIEEWDEVLASLAAGTIDVLL
ISPERLSNPRFAERLPQLLARTGMLVIDEAHCVSDWGFDFRPDYQRLTRTLLQLAPGTPV
LATTATANARVTEDVAAQLGEATVTLRGSLARASLRLAVVPGLSPLERYAWVAEAVGQLP
GSGIVYALTVAEAERVTGFLQAQGLDVAAYTGKTENRTELEDRLRDNQVKALVATSALGM
GYDKPDLAFCVHLGSPASPVAYYQQVGRAGRALDNAIAVLVPSDADERIWEYFATAGIPD
PEQVDRVLEVLAREGGLDESGHQLAVSESAISTATGIRPGRLATQLKILAVDGAVERVRG
GWAASGQPWHFDEQKWSSLQKVRATEADLMRRYAHGEGCLMQFLQQALDDPDPRPCGRCS
VCDGHLPPPGARPSEDLVVTARQHFRGLDSIVEPRKLWPSRLEGVRGKIGPIIAEGRAIA
FADDPAWSDVLARLWVDDQEAPPEILQAAVATLRRWAPHWQRPTAVVPMPSRRYPRLVGS
VADHLAQVGHLPVVEALRVSGPPPSDEAASGVRVSQLLERTGVVDGVELNGPVLLVDDTI
RTRWTATVAAHLLSTAGAGPVLPFAIHQLP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaccgctgagttcctcgccgccaccatccgctccgtggccgggccggaggcc
gcaccgcgcccggatcaggaacgggccgtgaccgaactggtcgaccacggccggcgggtg
ctggtggtccaggccacggggtggggcaagtccgcggtctactggggggcgacggcggca
ctgcgctcccggggtgcaggtcccaccttggtggtctcaccactcctggcactgatgcgg
gaccagatcgccgcggccgagcgggcagggctgcatgctgccacgatcaactccacgaac
atcgaggagtgggacgaggttctggcctcacttgccgccgggacgatcgacgtcctgctc
atctcccccgagcggctctcaaacccgcgcttcgccgagcgcctaccgcagctgctcgca
cgtaccgggatgctcgtgatcgacgaggcccactgcgtctcggactgggggttcgacttc
cggcccgactaccagcggctcacgcggaccttgctccagctcgcgcccggcacgccggtc
ctagccaccacggcgacggcgaacgcccgggtgaccgaggacgtcgccgcccagctgggt
gaggcgaccgtcaccctacggggctcactggcccgcgcctcactccgcctggccgtcgtc
ccggggctgagtccgctggaacgctacgcttgggtggccgaggcggtcgggcagctcccc
ggctctggcatcgtgtacgccctgacggtcgccgaggccgagcgggtgaccgggttcctg
caggcccaaggtctggacgtggccgcctacaccggcaagacggagaaccggaccgagctc
gaggaccggttgcgggacaaccaggtgaaggcgctggtagcgacgtcagcactcggcatg
ggctacgacaagcccgatctcgccttctgtgtgcatctcggctcgcccgcctcacccgtg
gcctactaccagcaggtcggacgcgccggccgagcgctcgacaacgccatcgcggtgctc
gtgccctcggacgccgatgaacgcatctgggagtacttcgccacggccgggatccccgat
ccggaacaggtcgatcgagttctggaggtgctggcgcgcgagggcggtctggacgagtcc
ggtcatcagctggccgtctcggagtcggcgatctcgaccgcgaccggcatccggcccgga
cgtctggccacgcagctgaagatcctcgccgtcgatggcgccgtcgagcgggtgcgtggc
ggctgggctgccagcggccaaccctggcacttcgatgagcagaagtggtcctcactacag
aaggtacgagcgaccgaagccgatctgatgcgccgctacgcccacggcgagggctgcctg
atgcagttcctgcagcaggccctggatgatcccgacccacgaccctgcggtcgctgctcg
gtctgcgacgggcacctgccccctcccggcgcccgcccgagcgaggacctggttgtcacc
gcccgccagcacttccgcggcctggacagcatcgtcgagccccgcaagctgtggccgtct
cgcctcgagggcgtacgcgggaagatcggtccgatcatcgccgaagggcgagccatcgct
ttcgctgacgaccccgcttggtcggatgtgctggcgcgactgtgggtcgacgaccaggag
gctccgccggagatcctgcaggctgccgtcgccacgctacgccggtgggcacctcattgg
cagcgcccgacggcggtcgtccccatgccgtcgcgacggtatccccggctcgtgggttcc
gttgcggaccacctcgcccaggtgggccaccttcccgtggtggaggcgctgcgggtcagc
ggaccgccgccatcggacgaggcggcctcgggtgtgcgggtctcgcaactgctggagcga
acgggcgtggtcgacggagtggagctgaacgggccggtcctgctcgtagacgacacgatc
cgcacccgatggacggccaccgtcgctgcacacctgctcagcacggctggtgcagggcct
gtcctaccgttcgcgattcaccagctcccctga
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