Halorarum salinum: HUG12_01960
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Entry
HUG12_01960 CDS
T06744
Name
(GenBank) transcription elongation factor Spt5
KO
K15172
transcription elongation factor SPT5
Organism
halu
Halorarum salinum
Pathway
halu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
halu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HUG12_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halu03021
]
HUG12_01960
03019 Messenger RNA biogenesis [BR:
halu03019
]
HUG12_01960
Transcription machinery [BR:
halu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
HUG12_01960
RNA polymerase I system
HUG12_01960
Messenger RNA biogenesis [BR:
halu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
HUG12_01960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Ribosomal_uL24m-like
KOW4_SPT5
DUF6093
SH3_KIN17_C
KOW2_Spt5
TBPIP_N
Motif
Other DBs
NCBI-ProteinID:
QLG63955
UniProt:
A0A7D5LEE2
LinkDB
All DBs
Position
complement(422749..423204)
Genome browser
AA seq
151 aa
AA seq
DB search
MPIFSVKTTASQERTVADMIASKEMSEIHAVLAPDQLTSYVLVEADGDAIIRRVLEEVPH
ARGLVEGPDGEAGRSSMSEVEHFLSPTPDVEGIAEGDIVELIAGPFKGEKAQVQRIDEGK
DQVTVELYEATVPIPVTVRGDQIRVLDSDER
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
ttgcccatcttctcggtgaagacgacggcgagccaggagcgcaccgtcgccgacatgatc
gccagcaaggagatgtcggagatccacgcggtgctcgcgcccgaccagctcacgagctac
gtgctcgtcgaggccgacggggacgcgatcatccgccgcgtgctggaggaggttccccac
gcccgcgggctcgtcgagggccccgacggcgaggccggccgatcctccatgtccgaggtc
gaacacttcctctcgccgaccccggacgtcgaggggatcgcggagggcgacatcgtcgaa
ctcatcgccggcccgttcaagggcgagaaggcgcaggtccagcgcatcgacgagggcaag
gaccaggtgaccgtcgaactgtacgaggcgacggtcccgatcccggtgacggtccgcggg
gaccagatccgcgtgctggacagcgacgaacggtag
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integrated database retrieval system
