Halorarum salinum: HUG12_05060
Help
Entry
HUG12_05060 CDS
T06744
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halu
Halorarum salinum
Brite
KEGG Orthology (KO) [BR:
halu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halu03016
]
HUG12_05060
Enzymes [BR:
halu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HUG12_05060
Transfer RNA biogenesis [BR:
halu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HUG12_05060
Prokaryotic type
tRNA splicing ligases
HUG12_05060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLG61136
UniProt:
A0A7D5Q8M8
LinkDB
All DBs
Position
1072880..1074316
Genome browser
AA seq
478 aa
AA seq
DB search
MTEGTQLAEVAENVYEIPRRDDMRVPARVYGSASLIEEMRAEGDLTLSQIRNVATLPGIR
KFALVLPDGHQGYGFPIGGVAAVDLEDGVISPGGIGFDVNCGVRVLRTDLTADDVDGSEA
DLADLLYEAIPTGLGKGGYLDTDLGDVREILERGLGWMHENGYATEADLAHCEENGRLPG
DAGKVPAEALTRGVNQVGSLGSGNHFLEVQRVAELHDAKTAAAYGLREDQVVVMIHSGSR
GLGHQTCTEYVRKFERGYPGIADSLPDRQLIYAPLGERLADDYWAAMNAAANFAWANRQA
MTHAVRAVLGDRFGDPAVELLYDVCHNIAKRERHAVDGGQTEVLVHRKGATRAFPAGRPE
VPAAYREVGQPVLIPGSMGTNSYVLAGGPRSLDLTFGSTAHGAGRVMSRTRAKSEYSAGE
LRRTLRGEGIYVRARSGGTLTEEAPGAYKDVDEVIRVSDALGIGTRVARLRPMATIKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagggacccaactcgcggaagtcgcggagaacgtctacgaaatcccgagacgg
gacgacatgcgcgtcccggcgcgggtatacggatcggcctcgttgatcgaggagatgcgg
gccgagggcgatctgacgctctcgcagatccggaacgtcgccacgctgccgggaatccgg
aagttcgcgctcgtcctgcccgacggccaccagggctacgggttccccatcggcggcgtc
gccgcggtcgacctcgaggacggggtgatcagcccgggcgggatcggcttcgacgtcaac
tgcggcgtccgggtgctccggaccgacctgaccgccgacgacgtcgacgggagcgaggcc
gacctcgccgatctgctctacgaggcgatcccgaccgggctcgggaaggggggatacctc
gacaccgacctgggggacgtgcgggagatcctcgaacggggactcggctggatgcacgag
aacgggtacgcgaccgaggcggacctcgcgcactgcgaggagaacggccgactgcccggc
gacgcgggcaaggtccccgcggaggcgctcacgcgcggcgtgaaccaggtcggctcgctg
gggtcgggcaaccacttcctcgaggtgcagcgggtggcggagctccacgacgccaagacg
gcggcggcctacggcctgcgggaggaccaggtcgtcgtcatgatccactcgggctcgcgc
ggcctcggccaccagacgtgtaccgagtacgtccgcaagttcgaacggggctaccccgga
atcgccgactcgctccccgacagacagctcatctacgcgccgctgggcgagcgactggcc
gacgactactgggcggcgatgaacgcggcggccaacttcgcgtgggcgaaccgccaggcg
atgacccacgccgtccgggccgtcctcggcgaccggttcggggaccccgccgtcgagttg
ctctacgacgtgtgccacaacatcgccaagcgggagcgacacgccgtcgacggcgggcag
acggaggtgctcgtccaccgaaagggggcgacgcgggcgttcccggccggccggccggag
gtcccggcggcgtaccgggaggtgggccagcccgtcctcatccccgggagcatggggacg
aactcgtacgtcctcgccgggggcccgcgctcgctcgacctgacgttcggctccacggct
cacggcgccggtcgggtgatgtcacggacgcgggcgaagtcggagtactccgccggcgaa
ctccggcggaccctccggggggaggggatctacgtgagggcacgctcgggcggtacgctg
acggaggaggccccgggcgcgtacaaggacgtcgacgaggtcatccgcgtgagcgacgcg
ctcgggatcggaacgagggtcgcccggctgcgcccgatggcgacgatcaaggggtga
DBGET
integrated database retrieval system
