Halorarum salinum: HUG12_09445
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Entry
HUG12_09445 CDS
T06744
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
halu
Halorarum salinum
Pathway
halu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUG12_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halu03019
]
HUG12_09445
03400 DNA repair and recombination proteins [BR:
halu03400
]
HUG12_09445
Enzymes [BR:
halu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUG12_09445
Messenger RNA biogenesis [BR:
halu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUG12_09445
DNA repair and recombination proteins [BR:
halu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HUG12_09445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
HTH_45
RecQ_Zn_bind
DDE_Tnp_1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QLG64036
UniProt:
A0A7D5QCB4
LinkDB
All DBs
Position
1957122..1959215
Genome browser
AA seq
697 aa
AA seq
DB search
MRGGVDSDSKSGIRRRGQELLEQSLGLDAEFRPDQWEAIERLVVDKERVLLVQRTGWGKS
TVYFIATKLLREQGHGPTLIISPLLALMHNQIQDAENQLGLEAWTINSNNTEDWTEAKEA
VVDGTCDVLLISPERLANIEFHEDVLMEMDDEFGMLVVDEAHCISDWGHDFRPDYRRIKR
ILQEFPDHIPVAATTATANDRVVDDVTDQVPRLRAIRGDLVRDSLRIQTNEIGSRAKRLA
WLAEIVPELPSSGIVYCLTTDEVETVAEWLSDQVLDFEPYHGGMDGDRRRELEDRLMNNE
VDGLAATNALGMGFNKPDLGWVVHFQRPPNLIRYYQEIGRAGRGLEEAFAILLSGDEDDR
VAEFFIEQAFPEPEDFETVLSTLEASNEPLHKYEILKRANISWKAASQCLDMLRVDNAII
RVDDGFERTSKDWSYDHDRIESVTRHRWEELDRIQEFARTDECLTAFIDDELDGSLEGDC
GRCANCTEPVIPTDIEDERLIQAAVEHYRAESWDEISPRYYLPTENGKSKIEKHRKHEPG
RVLSVYGDPGYGELVSQSWEQEDTYSQELVSAAVRQIETEWNPTPAPTWVTAVPSPTDWP
KVRDLARRIAAGLGLEYVQAVERVKEMRPQHELANSYQKRWNVEDAFDVTEDVRSAPVLL
IDDTVGSRWTFTEATFELRDAGSGSVYPFALAERTMW
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagagggggcgtggactcggattcgaaaagtgggatcaggcggcggggccaggaacta
ttggaacagagtctcggactagacgcggagttccggcccgaccaatgggaggcgatcgag
cgcttggtcgtcgacaaggagcgggtactactcgtccagcgaaccgggtgggggaagagc
acggtgtacttcatcgcgacaaagctactccgcgagcagggccacggcccgacgctcatc
atcagcccgctgctggcgttgatgcacaatcagatccaggacgcggagaaccagctgggt
ctcgaagcctggacgatcaactccaacaacacggaagattggaccgaagcgaaggaagct
gtcgtcgacggaacctgcgacgttctcctgatctcgccggaacggttggcgaatatcgaa
tttcacgaggacgtcctgatggaaatggacgacgagttcgggatgctcgtggtggacgaa
gctcactgtatctccgactggggccacgatttccgtcccgattatcgtcgtatcaagcgt
atcctccaggaattcccggatcacatcccggtcgcggcgacgactgcgactgcgaacgac
cgggtggtcgacgacgtcaccgaccaggttcctcgactccgggcgattcgtggcgacctg
gtccgtgattccctgcgcatccagacgaatgagatcggctcccgagccaaacgtttggcc
tggctcgccgagatcgtcccggaactcccgtcgtcgggtatcgtttactgcctgacgacc
gacgaggtcgagacagtcgccgagtggttgagcgatcaggtgttggacttcgagccctac
cacggtgggatggacggcgaccgtcgccgtgagttggaggatcgactgatgaacaacgaa
gtcgacggtctggccgcgacgaatgcgctggggatggggttcaacaaaccggaccttggg
tgggtcgtccacttccagcgaccgccgaacctcatccggtactaccaggagatcggccgg
gctggtcggggcctcgaggaggcattcgcaatcttgctctcgggggacgaagacgaccgg
gtcgcggagttcttcatcgaacaggccttcccagagccggaggatttcgagaccgtcctc
tcgacgttggaggccagtaacgaaccgttacacaagtacgagattctgaagcgggcgaac
atctcctggaaggctgcctcgcagtgcctggacatgctcagggtcgacaacgccatcatc
cgggtcgacgacggcttcgaacggacgtcgaaggactggagctacgaccacgaccggatc
gaatcggtgacccgacaccggtgggaggaactcgatcgaattcaggagttcgccagaacc
gacgagtgcctgacagcgttcatcgacgacgaactggatggttctctcgagggcgactgc
ggccgttgtgcaaactgtactgagccggttatcccgaccgacatcgaggacgagcggctg
atccaggcggccgttgagcactatcgagcggagtcgtgggacgagatatcgccacggtac
tacctgccgacggagaacggtaaatcgaagatcgaaaagcaccggaagcacgaaccgggt
cgcgtcctatccgtgtacggcgaccccggatacggtgagctcgtgagtcaatcctgggaa
caggaggacacgtacagccaggaactggtctctgcagctgtacggcaaatcgagaccgaa
tggaaccccactccagcgccgacgtgggtgacggcggtaccgtcgccaaccgactggccg
aaggttcgagacctcgctcgacgaatcgcggccgggcttggactagagtacgtccaggca
gttgaacgggtcaaggaaatgcgaccacagcatgagttggcgaactcctaccagaaacga
tggaacgtggaggatgccttcgacgttactgaggatgttcgatcggcgccggtgttgctt
atcgacgataccgtcggatctcggtggactttcacagaggcaacattcgagctacgggac
gcaggaagtgggtcggtctatccgttcgcgttagctgagcggactatgtggtga
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