Halorarum salinum: HUG12_13505
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Entry
HUG12_13505 CDS
T06744
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halu
Halorarum salinum
Brite
KEGG Orthology (KO) [BR:
halu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halu03016
]
HUG12_13505
Enzymes [BR:
halu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HUG12_13505
Transfer RNA biogenesis [BR:
halu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HUG12_13505
Prokaryotic type
tRNA splicing ligases
HUG12_13505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLG62687
UniProt:
A0A7D5LBN8
LinkDB
All DBs
Position
2723902..2725410
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AA seq
502 aa
AA seq
DB search
MTESREYDGIRLEKVREYVWQIPQEAGMNAPARVLASEPLLEQIADDDTLQQLKNATHLP
GITKYAVCMPDGHQGYGFPVGGVGATDATDGCISPGAVGYDINCGVRMVRTDLTYDDVRG
REEELVDQLFTNVPSGLGGGGVVETDVDTVDAVLERGMDWALEHDYATADDLAHCEDEGR
RSDARPEFVSGKAKDRGKNQLGSLGSGNHFLEVQRVTDVFDGDVASAFGLSEDQIVVLIH
CGSRGLGHQVCSDYLRKIEKQHGDLLELLPDRELAAAPADSELAEEYYGAMCAAINFAWV
NRQLITHRTRRVFERVFREDWEDLGMELLYDVAHNIAKKEVHEVGVDAEGRPVTDGDPTD
VEERELYVHRKGATRAFPAGRPEIPSAYREVGQPVIIPGSMGSGSYVLVGGERSLEETFG
STAHGAGRVMSRTRAKQEFWGETVQKELEEGSAIYVKAQSGATVAEEAPGVYKDVDEVVR
VSDELGIGRKVVRTFPVCNIKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtcacgcgaatacgacggcattcgactggaaaaggtgcgcgagtacgtctgg
cagatcccgcaggaggccgggatgaacgcgcccgcccgggtgctggcgagcgaaccgctg
ctcgaacagatcgcggacgacgacacgctccagcaactgaagaacgccacccacctcccc
ggcatcacgaagtacgccgtctgcatgcccgacggccaccaggggtacgggttcccggtc
ggcggcgtgggcgcgaccgacgcgaccgacggctgcatctcgcccggagccgtcggctac
gacatcaactgcggcgtccgcatggttcggaccgacctgacctacgacgacgtgcgaggg
cgcgaggaggaactcgtcgaccagctcttcaccaacgtcccctccggcctcggcgggggc
ggggtggtcgagacggacgtcgacaccgtcgacgcagtgctcgagcgtggcatggactgg
gctctcgaacacgactacgcgaccgccgacgacctggcacactgcgaggacgagggacga
cggtcggacgcgcgccccgagttcgtctcgggaaaggcgaaggaccgggggaagaaccag
ctcgggagcctcggctcggggaaccacttcctcgaggttcagcgggtcacggacgtgttc
gacggggacgtcgcgtcggcgttcggcttgtccgaggatcagatcgtcgtcctcattcac
tgcgggtcgcgggggctcggccaccaggtgtgttccgattacctccggaaaatcgagaag
cagcacggcgacctgctcgaactgctccccgacagggaactcgcggccgcacccgccgac
tcggagctcgcggaggagtactacggcgcgatgtgtgcggccatcaacttcgcctgggtg
aaccgacagctgatcacccatcggacgcgccgcgtgttcgagcgcgtgttccgcgaggac
tgggaggacctcgggatggaactgctatacgacgtcgcccacaacatcgcgaagaaggag
gttcacgaggtcggggtcgacgcggaggggcgcccggtgaccgacggcgacccgacggac
gtcgaggagcgggaactgtacgtccaccggaaaggggcgacgcgggcgttcccggcgggc
agaccggagatcccgtctgcctaccgcgaggtcggtcagccggtgatcatccccggtagc
atgggctcggggagctacgtgctcgtcggcggggagcggtcgctcgaggagacgttcggc
tcgacggcccacggggccggccgggtgatgtcgaggacgcgggcgaaacaggagttctgg
ggggagaccgtccagaaggaacttgaggaggggagcgccatctacgtgaaggcacagtcg
ggcgcgaccgtcgccgaggaggcgccgggtgtgtacaaggacgtcgacgaggtggtccgc
gtgagcgacgaactcggcatcggccgcaaagtcgtccgcaccttcccggtctgcaacatc
aagggctga
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