Natronosalvus halobius: NGM15_00020
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Entry
NGM15_00020 CDS
T08721
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halv
Natronosalvus halobius
Brite
KEGG Orthology (KO) [BR:
halv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halv03016
]
NGM15_00020
Enzymes [BR:
halv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NGM15_00020
Transfer RNA biogenesis [BR:
halv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NGM15_00020
Prokaryotic type
tRNA splicing ligases
NGM15_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
USZ71730
LinkDB
All DBs
Position
complement(2238..3701)
Genome browser
AA seq
487 aa
AA seq
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MTTTFDADGIVLEQVREHVWELPQEDGMRVPARVLASESLLEEISEDRTLEQLRNATHLP
GITNYAICMPDGHQGYGFPVGGVGAMDAENGCISPGAVGYDINCGVRMMKTNLSYDDVAG
HERELVDALFEAVPSGLGGGGVVETGVDTVEQILERGVDWALEAGYAVQDDLLHCEDEGV
RAGADASMVSQKAKDRGKNQVGSLGSGNHFLEVQRVTDVYDDGVAEAFGLERDQIVVLIH
CGSRGLGHQTCNDYLRKIERQHGGLLNQLPDKELAAAPAGSQLAEEYYAAMNAAINYAWV
NRQLIMHRTREVFADVFDRPWESMEMDLLYDVAHNIAKKEVHEVDGEDRELYVHRKGATR
AFPAGHPDVPAAYRDVGQPVIIPGSMGAGSYVLRGGENSLDLTFGSTAHGAGRLMSRTQA
KNEYWGEDVREDLESGQGIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDRVARTF
PVCNIKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacgttcgacgccgatggcatcgtgctcgagcaggttcgcgaacacgtctgg
gagctcccacaggaagacgggatgcgtgtccccgcacgcgtactcgccagcgaatcgcta
ctcgaggagatcagcgaggacaggacgctcgagcaattgcgcaacgcgacgcacctgccg
gggatcacgaactacgccatctgcatgcccgacggccaccaggggtacggctttccggtc
ggtggcgttggtgcgatggacgccgagaacggctgtatctcgcccggagcggtcggctac
gacatcaactgcggcgtccggatgatgaagaccaacctgagctacgacgacgtcgccggg
cacgaacgcgaactcgtcgacgccctattcgaggccgtcccctccggcctcggcggcggc
ggcgtcgtcgagaccggcgtcgacaccgtcgagcagatcctcgagcgcggcgtggactgg
gcgctcgaggccggctacgcggtccaggacgatctccttcactgcgaggacgagggcgtc
cgggcgggcgccgacgcgtcgatggtgagccagaaggcgaaggatcgcgggaagaaccag
gtcggctccctgggttctggtaatcacttcctcgaggtccagcgggtgactgacgtgtac
gacgacggcgtggcggaggcgttcggcctcgagcgcgatcagatcgtcgtgctcatccac
tgtggctcccgcgggctgggccaccagacctgcaacgactatctgcggaagatcgagcgc
cagcacggtggcctcctcaatcaactccccgacaaggaactcgccgccgcccccgctggg
tcgcaactggccgaggagtactacgcggcgatgaacgccgcgatcaattacgcctgggtc
aaccgtcagctgatcatgcaccggacccgcgaggtgttcgcggacgtgttcgaccgcccc
tgggagtcgatggagatggacctcctctacgacgtggctcacaacatcgcgaagaaggag
gtccacgaggtcgacggcgaagatcgggaactgtacgttcaccggaaaggtgcgacgcgg
gcgttcccggcgggtcaccccgacgtccccgcagcctatcgcgacgtcggccagccggtg
atcatccccgggagcatgggcgccggcagctacgtccttcgcgggggcgaaaattcactc
gacctcacgttcggctcgacggcccacggcgccggccgactgatgagtcgcacccaggcc
aaaaacgagtactggggcgaggacgtccgcgaggacctcgagtcgggccaggggatctac
gtcaaggcccagtcgggggcgacggtggccgaagaggccccgggcgtctacaaggacgtc
gacgaggtcgtgcgcgtctcggacgaactcgggatcggcgacagggtcgcccggacgttc
ccggtgtgtaacatcaaggggtga
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