Halomonas alkalicola: B6N23_03800
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Entry
B6N23_03800 CDS
T09267
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
halw
Halomonas alkalicola
Pathway
halw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6N23_03800 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halw03019
]
B6N23_03800 (rne)
03009 Ribosome biogenesis [BR:
halw03009
]
B6N23_03800 (rne)
Enzymes [BR:
halw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B6N23_03800 (rne)
Messenger RNA biogenesis [BR:
halw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6N23_03800 (rne)
Ribosome biogenesis [BR:
halw03009
]
Prokaryotic type
rRNA processing factors
B6N23_03800 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WLI74061
LinkDB
All DBs
Position
790465..793611
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRIEPSLEAAFVDF
GADRHGFLPLKEISREYFVKEPASGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFIS
LAGRFLVLMPNNPKAGGISRRIEGEERSQLKEAMGQLTIPDRMGLIVRTAGIGRSPEELQ
WDLDYLVQVWESITAEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSEAVHQEAL
AFIRQVMPSYQQKIKLYVDEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSI
DINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENR
VRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSISLS
IMRLIEEEAMKERSAQIRAILPVPVATYLLNEKRNVLADIERRQGVRVVLLPSPDMDTPH
YDVQRLRDDHVDEEGTATLSSFELSTDTEVGREPEPTFGKPVQRAEAAVKTVIHHEPAPA
SLQQEEAPAPKAPAKPPAPAARAPARPPAVQQPVAEPQAGVLGRLVKGLAKLLGGDEAPA
DSGKAPAARGEESRADQGARKPAQRDDERSGRNQRQRRPRSEERRGAPRQESERGDSRAE
SADNRGGRGGRGRGRQDDARQARQPEAPKRDERPRDEKPRDDARRQRGGDRRDERPAEKP
VEAKSNAPRAEAPVDDGKPKRTRNNPRSRSRQHAISPKALEEQQRLQAQAAEAQPETAAE
APKAEVKAEAPKAAPQPAEPKAEAPKPDAPKAEAPKAAEPKAEAPKAAEPKAEAPKPAEP
KAEAPKPEVAKPDAPKAEAPKSAEPKAEAPKPEVAKPTEQKAEAPKPDAPKAEAPKPDAP
KAEAPKPDAPKAEAPKPDAPKAEAPKPDAPKAEAPKPDAPKAEAPKPDAPKAEAPKPDAP
KAEAPKPDAPKAEAPKPAAQAPVEAKAEVKAEAPKAEPKPAEAPKADAKAEETPEERRAN
RRRRRAHNDPREIRRRELEAKAQESPQR
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgcgacccagcccgaagagctgcgcgtcgcgctggtcgat
ggacaacgcctctacgacctggacatcgaatccggtgcccgggaacagaagaaagccaat
atctaccgcggcaagatcacccgcatcgagccctccctggaagccgccttcgtcgacttc
ggcgcggatcgccacggcttcctgccgctgaaggagatctcccgcgagtacttcgtcaag
gagcccgcctccggccgccccagcatcaaggaggtgctcaaggaggggcaggaggtcatc
gtccaggtcgacaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatcagt
ctggccggtcgcttcctggtactgatgcccaacaaccccaaggccggcggcatctcgcgc
cgcatcgagggggaggagcgcagccagctcaaggaggccatggggcagctcaccattccc
gaccgcatgggcctgatcgtgcgcaccgccggcatcggccgctcccccgaagagctgcag
tgggacctggactacctggtccaggtgtgggaatcgatcaccgccgaggccggcaagcgc
tccgctcccttcctgatctaccgcgagtccaacgtcatcatccgcgccatgcgcgactac
ctgcgccaggacatcggcgaggtgctgatcgacagcgaggcggtgcaccaggaggcgctg
gccttcatccgccaggtgatgccctcctaccagcagaagatcaagctctacgtcgacgag
gtgccgctcttctcgcgcttccagatcgagtcgcagatcgagactgcctacgagcgtgag
gtgaagctgccctccggcggctccatcgtcatcgatcacaccgaggcgctggtctccatc
gacatcaactcggcgcgcgccacccgcggcagcgatatcgaggagaccgccctgcagacc
aacctggaggcggccgacgagatcgcccgccagctgcgtttgcgcgatatcggcggcctg
gtggtgatcgacttcatcgacatgagcccggcacgcaaccagcgcgaggtcgagaaccgc
gtgcgggatgcgctgaagctggaccgcgcccgggtgcagatcggccgcatctcgcgcttc
ggcctgatggaaatgtcccgccagcgcctgcgcccgtcactcggcgagaccagcggcgtg
gtctgcccgcgctgcgacggccagggcaccatccgcgacgtccgctccatctccctctcg
atcatgcgcctgatcgaggaagaggccatgaaggagcgcagcgcccagatccgcgccatc
ctcccggtgccggtagccacctacctgctcaacgagaagcgcaacgtgctggccgacatc
gagcgccgccagggcgtgcgggtggtgctgctgcccagcccggacatggatacgccccac
tacgatgtccagcggctgcgcgacgaccacgtggacgaggagggcaccgccaccctctcc
agcttcgagctctccaccgacaccgaggtcggccgcgagccggaacccaccttcggcaag
ccggtgcagcgcgccgaggccgcggtgaagacggtcatccaccacgagccggcccccgcc
tccctgcagcaggaagaggccccggcacccaaggcccccgccaagccccctgccccggca
gccagggcgccggcccgcccgcccgcggtgcagcagccggtcgccgagccccaggccggc
gtgctgggccgcctggtcaagggcctggccaagttgctcggcggcgacgaagcgcctgcc
gacagcggcaaggcccccgccgcccgcggcgaggagtcacgcgctgaccagggcgcccgc
aagcccgcgcagcgcgacgacgagcgcagcgggcgcaatcagcgtcagcgccgcccgcgc
agcgaggagcgccgcggcgcgccgcgccaggagagcgagcgcggcgacagcagggccgag
tccgccgacaaccgcggtggccgtggcggccgtgggcgcggccgccaggacgatgcccgt
caggcgcgtcagcccgaggcacccaagcgcgatgaaaggccgcgcgacgagaagccccgg
gacgacgcgcgtcgccaacgcggcggcgacaggcgtgacgagcgcccggccgagaagccg
gtagaggcgaagagcaacgcgcccagggccgaggcgccggtggacgacggcaagcccaag
cgtacccgcaacaacccgcgcagccgcagccgtcagcacgccatcagcccgaaggccctg
gaggagcagcagcgcctccaggcccaggcggccgaggcccagccggaaacggcagccgag
gcgcccaaggccgaggtaaaggctgaagcgcccaaggcagcgccgcagcccgccgagccg
aaggccgaggcaccgaagcccgacgcgccgaaggccgaggctccgaaagccgccgagccg
aaggccgaggctccgaaagccgccgagccgaaggccgaggctccgaagcccgccgagccg
aaggccgaagcgcccaagcccgaggtagccaagcccgacgcaccgaaggccgaagcgccc
aagtccgccgagccgaaggccgaggcgcccaagcccgaggtagccaagccgaccgagcag
aaggccgaagcgcccaagcccgacgcgccgaaagccgaggcacccaagcccgacgcgccg
aaggccgaggcaccgaagcccgacgcgccgaaggccgaggcacccaagcccgacgcgccg
aaggccgaggcacccaagcccgacgcgccgaaggccgaggcaccgaagcccgacgcgccg
aaggccgaggcaccgaagcccgacgcgccgaaggccgaggcaccgaagcccgacgcgccg
aaggccgaagcgcctaagcccgacgcgccgaaagccgaggcaccgaagccggcggcgcaa
gcaccggtcgaggccaaggccgaggtaaaagccgaagcgcccaaggcagaaccgaagccc
gccgaggcaccgaaggccgacgccaaggccgaagagacgccagaggagcgccgcgccaac
cgccgtcgccgccgcgcgcacaatgacccgcgcgagatccgccgtcgcgagctcgaggcc
aaggcccaggagagccctcagcgctag
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