Halomonas alkalicola: B6N23_05040
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Entry
B6N23_05040 CDS
T09267
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
halw
Halomonas alkalicola
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halw03016
]
B6N23_05040
Enzymes [BR:
halw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B6N23_05040
Transfer RNA biogenesis [BR:
halw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B6N23_05040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Acyl-CoA_dh_2
Motif
Other DBs
NCBI-ProteinID:
WLI74902
LinkDB
All DBs
Position
1049584..1051524
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AA seq
646 aa
AA seq
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MLQNNALLAQLKQQIRSSTPRVEGVIKATQKGFGFLETDEGDSYFVPPPAMKQVLHGDRV
GAILHEEGDKKRVEPDTLIEQGLDRFIARVQLREGRLAVVPDHPSISNVLKARIKRSLDE
ATIGDADWVVARLVRHPLKADDRGFFTQIDELVAKADDPAVPWRVTLARHALEQECPDAG
DDWPLRDEGLEREDLTAAPFFTIDGEKTRDMDDALRVVPREGGGWELTVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGKERPVLACTLNVEADGSLGDY
RFFAATATSRAKLVYDRVSDWLEGQGDWAPADEIAEQLKALRDLTEARSAWRAAHALVFK
DRPDYVFDLDEAGNVLDVRTEERRIANRMIEESMIAANACCARLLAEHVGHGIFNVHRAF
EDDKAEAARDFLASQEIEVALEALTELPRYRELKRELEGRDDAWLDARLRRFQGFTSMSA
KPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEASLALTEQLTERRRLN
RMAERDVKDWLYVRYLTPAAEAQESFDAEIIAINRGGMRVRLTANGATAFVPAPMIHSDR
DKVAIDDKEGRIQVESEERFKLGDHIRVALLEAREETRSLVARPAD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagaacaacgccctgcttgctcagctcaagcaacagattcgctcaagcactccc
cgggtcgagggggtgatcaaggccacccagaagggattcggcttcctcgagaccgacgag
ggcgactcctacttcgtgccgccccccgccatgaagcaggtgctgcatggcgatcgcgtc
ggggccatcctccacgaggagggcgacaagaagcgcgtcgagcccgacaccctgatcgaa
caggggctcgaccgcttcatcgcccgggtgcagctgcgcgaaggtcgcctggccgtggtc
cccgaccacccctccatcagcaacgtcctcaaggcgcgcatcaagcgcagcctggacgag
gccaccatcggcgacgccgactgggtcgtcgctcgcctggtgcgccatccgctcaaggcc
gacgatcgcggcttcttcacccagatcgacgagctggtcgccaaggccgacgaccccgca
gtgccctggcgcgtcaccctggcccgccacgccctggagcaggagtgccccgacgccggt
gacgactggccgctgcgcgacgagggcctcgagcgcgaggacctcaccgccgcgcccttc
ttcaccatcgacggcgagaagacccgggacatggacgacgccctgcgcgtggtgccccgg
gagggcggcggctgggagttgaccgtggccatcgccgaccccaccgcctacgtggaggaa
ggccacgcggcggacctggaggcgcgcacccgtgccttcaccgtctacctgccgggccag
aacgtcaccatgctgcccgagcagctggccgacgacctctgctcgctgtgggagggcaag
gagcgcccggtactggcctgcaccctgaacgtggaggccgacggcagcctgggcgactat
cgcttcttcgccgccaccgccacctcgcgagccaagctggtctatgaccgcgtctccgac
tggctggagggccagggggactgggccccggcagacgagatcgccgagcagctcaaggcc
ctgcgcgacctcaccgaggcccgcagcgcctggcgcgccgcccatgccctggtgttcaag
gatcgtcccgactacgtcttcgacctggacgaggccggcaacgtgctggacgtgcgcacc
gaggagcgccgcatcgccaaccgcatgatcgaggagtcgatgatcgcggccaacgcctgc
tgcgcgcgcctgctggccgagcacgtgggccacggcatcttcaacgtccaccgcgccttc
gaggacgacaaggccgaggcggcccgcgacttcctggccagccaggagatcgaggtggcg
ctcgaggccctcaccgaactgccccgctaccgggagctcaagcgcgaactggagggccgc
gacgacgcctggctcgacgcgcgcctgcgccgcttccagggcttcaccagcatgtcggcg
aagcccggcccgcacttcggcctggggcttgccgcctacgccacctggacctcaccgatc
cgcaagtatggcgacatggtcaaccaccgcctgatcaagcgggtgctcaagggcgagcag
gccccggccgaggcgagcctcgcgctcaccgagcagctcaccgagcgccgccggctcaac
cgcatggcggagcgcgacgtcaaggactggctctacgtacgctacctgaccccggccgcc
gaggcccaggagagcttcgacgccgagatcatcgccatcaaccgcggcggcatgcgcgtg
cgtctcaccgccaacggggccactgccttcgtgccggcaccgatgatccacagcgatcgc
gacaaggtggccatcgacgacaaggaggggcgtatccaggtggagagcgaggagcgcttc
aagctgggcgaccacatccgcgtggccctgctggaggcccgcgaggagacccgctcgctg
gtggcgcgtcccgccgactga
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