Halomonas alkalicola: B6N23_05900
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Entry
B6N23_05900 CDS
T09267
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
halw
Halomonas alkalicola
Pathway
halw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6N23_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halw03019
]
B6N23_05900
03009 Ribosome biogenesis [BR:
halw03009
]
B6N23_05900
Enzymes [BR:
halw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B6N23_05900
Messenger RNA biogenesis [BR:
halw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B6N23_05900
Ribosome biogenesis [BR:
halw03009
]
Prokaryotic type
rRNA helicases
B6N23_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WLI74436
LinkDB
All DBs
Position
complement(1231790..1233499)
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AA seq
569 aa
AA seq
DB search
MTPTSVASPSFGDLALLPAVLSAVETLGYETPSPIQIQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAVSFSRYGQNLQGLEVAVLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKEAQRVFFSATLPTEIERIVNRYLVDPVKVAIESRTTTGENIEQRLVRVDGGAKLEALS
RILEVEPVDAAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTIQRLKRGKVD
VLIATDVAARGLDVPRITHVFNYDLPQDSEAYTHRIGRTGRAGRTGISITFVGFREGRKV
GWIEQATGQKMTEMEVPDEAAIRAHRDEVFHQKVIAALTAGAEEQRALVGRLVEDGYDPI
ELACAFARLARADEAPIGRMQAPRKEARNDRPTRDGKPPRRESRGPSEGMTRYRVSVGHK
DGVKPGQLVGALANEGGIEGSRIGRIDIRTSFSVVELPSSLPASILAKMARARVAGRALE
ISEDSGAPERAPRRRREDGDAPIRRPSRA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgacttctgtcgcctcgccgagcttcggtgacctcgctctgctgcccgccgtt
ctgtctgctgtcgagaccctgggctacgagaccccctcgccgatccagatccagaccatt
ccggccctgctggaagggcgtgacatgctgggccaggcccagaccggcaccggcaagacc
gctgccttcgctctgccgctgctctcccggctcgagctgacccgtcgcgagccccaggtg
ctggtgatggcgccgacccgcgagctggcccagcaggtggccgtctccttcagccgctat
ggccagaacctccagggcctggaagtggcggtcctgtgcggcggccaggagtatcgcgag
cagctgggtgccctgaagcgtggcgcccaggtcgtggtcggcacccccggccggatcatc
gatcacctcgatcgcggcagcctcaagctcgacgggctctccgccctggtgctggacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgcgtggtcgccgacacc
ccgaaggaagcccagcgggtcttcttctccgcgaccctgccgaccgagatcgagcgcatc
gtcaaccgttacctggtggacccggtgaaggtggccatcgagtcgcgcaccaccaccggc
gagaacatcgagcagcgcctggtgcgcgtcgatggcggtgccaagctggaggcgctgtcg
cgcatcctggaagtcgagccggtggatgccgccatcgtcttcgtgcgtacccgggccgcc
tgtaccaccctgatggagcagctctccgcccgcggcgtcaacgtggccagcctctccggt
gacctggaccagagcctgcgcgagcgcaccatccagcgcctgaagcgtggcaaggtcgac
gtgctgatcgccaccgacgtggccgcccgcggcctcgacgtgccgcgcatcacccacgtc
ttcaactacgacctgccccaggactccgaggcctacacccaccgcatcggccgcaccggc
cgtgccgggcgtaccggtatctcgatcaccttcgtgggcttccgcgaaggccgcaaggtg
ggctggatcgagcaggccaccggccagaagatgaccgagatggaagtgcccgacgaggcc
gccatccgcgcccatcgcgacgaggtcttccaccagaaggtgatcgccgcgctgaccgcc
ggtgccgaagagcagcgcgccctggtgggccgcctggtcgaggatggctacgaccccatc
gagctggcctgtgccttcgctcgcctggcccgtgccgacgaggcccccatcggccgcatg
caggcgccgcgcaaggaagcccgcaacgatcgccccacccgcgacggcaagccgccgcgt
cgtgagagccgcggcccgagcgagggcatgacccgctaccgcgtctccgtgggccacaag
gacggcgtcaagcccggccagctggtcggggcgctggccaacgagggcggcatcgagggc
tcgcgtatcggccgcatcgatatccgcacctccttctccgtggtggagctgccgagctcg
ctgccggccagcatcctggccaagatggcccgcgcccgcgtcgccggccgcgccctggag
atcagcgaggacagcggcgcccccgagcgcgccccgcgccgtcgtcgcgaggatggtgac
gcgccgattcgtcgcccgtcacgcgcctga
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