Halomonas alkalicola: B6N23_08240
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Entry
B6N23_08240 CDS
T09267
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
halw
Halomonas alkalicola
Pathway
halw03030
DNA replication
halw03410
Base excision repair
halw03420
Nucleotide excision repair
halw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B6N23_08240 (polA)
03410 Base excision repair
B6N23_08240 (polA)
03420 Nucleotide excision repair
B6N23_08240 (polA)
03440 Homologous recombination
B6N23_08240 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halw03032
]
B6N23_08240 (polA)
03400 DNA repair and recombination proteins [BR:
halw03400
]
B6N23_08240 (polA)
Enzymes [BR:
halw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B6N23_08240 (polA)
DNA replication proteins [BR:
halw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B6N23_08240 (polA)
DNA repair and recombination proteins [BR:
halw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
B6N23_08240 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B6N23_08240 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WLI74846
LinkDB
All DBs
Position
complement(1729549..1732308)
Genome browser
AA seq
919 aa
AA seq
DB search
MADTPIVLVDGSSYLYRAFHALPPLTTSNGQPTGAIKGVLNMLKRLIKDYPDSPMAVVFD
APGKTFRDELFAEYKSHRPPMPDDLRSQVAPLHQCVKALGLPLLCIEGVEADDVIGTLAR
RATEAGRDAVISTGDKDMAQLVNAHITLVNTMKDETLDVAGVEEKFGLPPELIIDLLALM
GDKVDNIPGVPGVGEKTALGLLQGMEGGLETIYADLEKVKTLDFRGAKTLPKKLEEHRDQ
AFLSYRLATIKTDCELPVGLDDLDIAHPDREALLELYREYEFKAWLAELLEGSDSGVDDA
AGGTPTPADADAPPCSDAREDQMILEQADLDAWLARLQAAEAFCFDLETTSLNYMEAQIV
GVGLALQAGEAAYIPLAHDYLDAPAQLDRDAVLAALKPLLEDAGKTKIGQNLKYDISVLA
SHGITVAGPLEDTMLESYVLDSTATRHDMDSLALKYLGEKTVSFEEIAGKGAKQLTFNQI
ALEQAAPYACEDVDITLRLHGELRPRLAATGRLAEVLEEIELPLVPVLSRMERTGVALDP
QRLDAQSRELEVRIRELEARAHELAGREFNLGSPKQLGQILFEEQKIPVIKKTPKGAPST
AEAVLEELALDYPLPKVIMEHRGLAKLKSTYTDKLPRLVNKGTGRLHTSYHQAVTATGRL
SSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIELRIMAHLSEDRGLLDAFAE
GRDIHAATAAEVFGVPLEKVSGDQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTWIE
RYFDRYPGVARYMERIRTQAAEDGFVETVFGRRLYLPEIHSQNRARRQGAERTAINAPMQ
GTAADIIKRAMIDVDAWLQAGEMDAWMVMQVHDELVFEVAEAQVEAFIEQVKGRMQGAAE
LSVPLIVEAESGANWDEAH
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggccgatacccccatcgtactcgtcgacggttcttcctacctctaccgcgcctttcac
gccctcccgccgctgaccacctccaacggccagcccaccggggccatcaagggcgtgctc
aacatgctcaagcggctgatcaaggactacccggacagtcccatggcggtggtcttcgac
gcgccgggcaagaccttccgggacgaactgttcgccgagtacaagtcccatcgccctccg
atgcccgacgacctgcgctcccaggtggcgccgctgcatcagtgcgtcaaggcgctgggg
ctgccgctgttgtgcatcgagggagtggaggcggacgacgtcatcggcaccctggcccgc
cgggccaccgaggcggggcgcgacgccgtgatctccaccggcgacaaggacatggcccag
ctggtcaacgcccatatcaccctggtcaacaccatgaaggacgagaccctggacgtggcc
ggggtggaggagaagttcgggctgccgcccgagctgatcatcgacctgctggcgctgatg
ggcgacaaggtcgacaacattcccggcgtgcccggcgtgggcgagaagaccgcgctgggc
ctactgcaaggcatggagggcggcctagagaccatctatgccgatctcgagaaggtcaag
acgctggatttccgcggcgccaagacgctgccgaagaagctcgaggagcaccgcgaccag
gccttcctctcctaccggctggccaccatcaagaccgactgcgagctgcccgtcggcctc
gacgatctcgatatcgcccacccggatcgcgaggcgctcctcgagctctaccgcgagtac
gagttcaaggcgtggctcgccgagctgctggagggcagcgacagcggcgtcgatgatgcc
gccggcggcacgccgacccctgccgatgccgacgctcccccctgtagcgatgcccgggag
gaccagatgatcctcgaacaggccgacctcgacgcctggcttgcgcgcctgcaggcggcc
gaggccttctgcttcgacctggagaccaccagcctcaactacatggaggcgcagatcgtc
ggggtggggctggcgcttcaggcgggggaggcggcctatatcccgctcgcccacgactac
ctggacgcccccgcgcagctcgaccgcgacgcggtgctcgctgccctaaagccgctgctg
gaggatgccggcaagaccaagatcggccagaacctcaagtacgacatctcggtgctggcg
agccacggcatcacggtggcagggcccctggaggacaccatgctggagtcctacgtgctg
gactccaccgccacccgccacgacatggactccctggcgctgaagtacctcggcgagaag
accgtctccttcgaggagatcgccggcaagggggccaagcagctcaccttcaatcagatc
gccctggagcaggcggccccctacgcctgcgaggacgtcgacatcaccctgcgcctgcac
ggcgagctgcgcccgcgcctcgcggccaccgggcgcctggccgaggtactggaagagatc
gagctgccgctggtgccggtgctgtcgcgcatggagcgcaccggcgtggcgctggacccg
cagcgcctcgatgcccagagccgcgagctcgaggtgcgcatccgcgagctggaggcccgc
gctcatgagcttgccgggcgcgagttcaacctgggctcccccaagcagctcggccagatc
ctcttcgaggagcagaagatcccggtgatcaagaagacccccaagggggcgccctccacc
gcggaagccgtgctggaggagctggcgctggactacccgctgcccaaggtgatcatggag
caccggggactcgccaagctcaagtccacctacaccgacaagctgccgcggctggtcaac
aagggaaccgggcggctgcacaccagctaccaccaggcggtcaccgccaccgggcggctc
tcctccagcgaccccaacctgcagaacatcccgattcgcaccgaggaggggcgcaagatc
cgccaggcctttatcgcccggcccggctaccgcatcgtcgccgcggactactcccagatc
gagctgcgcatcatggcgcacctatccgaggacagggggctgctcgacgccttcgccgag
gggcgcgatatccatgccgccaccgcggcggaggtgttcggcgtgcccctggagaaggtc
tcgggggaccagcggcgcagcgccaaggcgatcaactttggcctgatctacggcatgagc
gcctggggcctgggccgccagctgcatatcgagcgcaatcaggcccagacctggatcgag
cgctacttcgaccgctacccgggggtggcacgctacatggagcgcatccgcacccaggcg
gcggaggatggcttcgtcgagacggtgttcggccggcgcctctacctgccggagatccac
tcccagaaccgcgcccgccgccagggggccgaacgcaccgcgatcaacgcccccatgcag
ggcaccgccgcggacatcatcaagcgcgccatgatcgacgtggacgcctggctgcaggcc
ggcgagatggacgcctggatggtgatgcaggtccacgatgaactggtgttcgaggtggcg
gaggcgcaggtggaggccttcatcgagcaggtgaaggggcgcatgcagggcgccgccgag
ctcagcgtgccgctgatcgtcgaggcggagagtggggccaattgggacgaggcccactga
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