Halomonas alkalicola: B6N23_10160
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Entry
B6N23_10160 CDS
T09267
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
halw
Halomonas alkalicola
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halw03016
]
B6N23_10160 (thpR)
Enzymes [BR:
halw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
B6N23_10160 (thpR)
Transfer RNA biogenesis [BR:
halw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
B6N23_10160 (thpR)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
WLI72165
LinkDB
All DBs
Position
complement(2121624..2122139)
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AA seq
171 aa
AA seq
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MRLFLALVPPPALRWRLGALADVAQARCGGRRMPDASLHLTLAFLGEVGDKQAEELSEEI
RSLAIPAGHWTLDVWGHFRRPGIVWVGGRRPDTALQELHERLWERLEAHGLPGRPSRFIP
HVTLLRRAERLEADGLPDVDLEWTYNRVTLIHSINDGQTARYVPLACSRAR
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcggctcttcctggcgctggtaccgccgcccgcactgcgctggcggctcggcgccctg
gccgatgtggcccaggcccgctgcggcggaagacgcatgccggacgcgagcctccacctg
acccttgcctttctcggcgaggtgggcgacaagcaggccgaggagctgtcggaagagatc
cgttcgctggccatccccgccgggcactggacgctggatgtctggggtcacttccgtcgc
ccgggtatcgtctgggtgggcggtcgccgcccggataccgccctccaggaactgcacgag
cggctgtgggagcgcctggaagcccacggcctgccggggcgcccctcccgcttcatcccc
catgtcaccctgctgcgccgggccgaacgcctcgaggccgacggcctgccggacgtggac
ctcgaatggacctataatcgggtgacgctgattcattcgatcaacgacggccagaccgca
cgctacgtgcccctggcatgctctcgggcgcgctga
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