Halomonas alkalicola: B6N23_12295
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Entry
B6N23_12295 CDS
T09267
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
halw
Halomonas alkalicola
Pathway
halw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6N23_12295 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halw03021
]
B6N23_12295 (rho)
03019 Messenger RNA biogenesis [BR:
halw03019
]
B6N23_12295 (rho)
Transcription machinery [BR:
halw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B6N23_12295 (rho)
Messenger RNA biogenesis [BR:
halw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B6N23_12295 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA
AAA_22
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
WLI72546
UniProt:
A0ABY9H251
LinkDB
All DBs
Position
2582147..2583406
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKQKSVPDLLEIAREMGIDNLARSRKQDIIFAILKKHAKSGEPIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGRIRPPKEGERYFALLKVSEIN
FDKPENAKHKILFENLTPLFPQERLRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVYPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMDDTAATEFLIDRLKDTKTNIEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgacctcaagcaaaagtcagtgccggatctcctggagatcgcccgcgag
atgggcatcgacaacctggcgcgctcccgcaagcaggacatcatcttcgccatcctcaag
aagcatgccaagagcggtgagccgatctatggcgatggtgtgctggagatccttcaggat
gggttcggcttcctgcgcagtgccgacagctcctatctggccgggcccgacgacatctat
gtgtcgccctcccagatccgtcgcttcaacctgcgcaagggcgactccatctccggcagg
atccgcccccccaaggagggcgaacgctactttgccctgctcaaggtcagcgagatcaac
ttcgacaagcctgagaacgccaagcacaagatcctcttcgagaacctcacgccgctgttc
ccccaggagcggctgcgcatggagatcggtaacggctccaccgaggatctgacggcgcgg
atcatcgatctcacggcgcccatcggcaagggccagcgcggcctgctggtctccccgccc
aaggcgggcaagacgctgatgctgcagaacatcgccacctccatcacccgcaacaacccc
gagtgccatctgatcgtcctgctgatcgacgagcgcccggaagaggtgacggagatgtcg
cgcaccgtgcgcggcgaggtggtggcctcgaccttcgacgagccgccggcccgccacgtg
caggtggccgagatggtgatcgagaaggccaagcgcctggtggaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgcctggcacgcgcctacaacaccgtggtgccgagc
tccggcaaggtgctgaccggtggcgtggacgctcacgccctggagaagcccaagcgcttc
ttcggcgcggcgcgcaacatcgaggagggcggaagcctgaccatcatcgccacggcgctg
gtggacaccggctccaagatggacgaggtgatcttcgaggagttcaagggcaccggcaac
atggaggcgcacctggaccgcaagctggccgagcgtcgcgtctacccggccatcaacatc
cgccgctccggtacccgccgcgaggacctgctcgcctccgaggacgagatgcagcgcatg
tggatcctgcgcaagctgctcaaccccatggatgacaccgcggccaccgagttcctgatc
gaccgcctcaaggataccaagacaaacatcgagttcttcgaggccatgaaacggcgttga
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