Halomonas alkalicola: B6N23_16505
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Entry
B6N23_16505 CDS
T09267
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
halw
Halomonas alkalicola
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halw03032
]
B6N23_16505 (topA)
03400 DNA repair and recombination proteins [BR:
halw03400
]
B6N23_16505 (topA)
Enzymes [BR:
halw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B6N23_16505 (topA)
DNA replication proteins [BR:
halw03032
]
Prokaryotic type
DNA Topoisomerases
B6N23_16505 (topA)
DNA repair and recombination proteins [BR:
halw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B6N23_16505 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WLI73294
LinkDB
All DBs
Position
3504543..3507182
Genome browser
AA seq
879 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGSDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSPEEKAEYRKRKSQEQLIRRMGIDPEHGWEAHYEILPGKEKVVAELQKLAQKADTVYL
ATDLDREGEAIAWHLRETIGGDDARYKRVVFNEITKNAIQEAFKDPGTLNMPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAMRLIVEREREIRAFVPEEFWDVHADLVP
QVEGGDGEPVRFELVRQDGKAFRPTSEAETLERIAALRKASLAITSREDKPTRSKPNPPF
ITSTLQQAASGRLGFSVKKTMTLAQRLYEAGYITYMRTDSTNLSKDAVESVREFIGGEYG
ERYLPEAPNRYSSKEGAQEAHEAIRPSDVGRRATDLAGMERDAERLYELIWRQFVACQMT
PAEYLSSTLTVEVDGYELKAKGRVLKFDGYTRVMKPAGKNEDQSLPDLAEGTPMTLASLD
PLQHFTKPPARYTEASLVKELEKRGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDI
VTERLKESFPDLMDYSFTARMEDGLDEVAEGERNWRALLDAFYAEFRKELSEAESEEGMR
PNQPVPTDIDCPSCGRKMQIRTASTGVFLGGSGYNLPPKERCKTTIDLLPGEEAVAADAD
EEAETDALRAKHRCGKCGTAMDSYLIDETRKLHICGNSPDCDGYEIEQGRFRIKGYDGPT
IECDKCGSEMQLKSGRFGKYFGCTNSECKNTRKLLRSGEVAPPKMDPIDMPELACQKVDD
HYVLRDGASGLFLAASKFPKNRETRPPLVRELKAHAEELPEKYRYLLDAPSEDPDGRPAQ
IRFSRKAKEQFVMTDEEGKATGWKATFDGSRWQVEDKRK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagtcactggtcatcgtcgagtcgccggccaaggccaagacgatcaacaaatat
ctcggcagcgacttcatcgtgaagtcgagtgtgggtcacatccgtgatctgccgaccagc
ggctcgggcaaggcggcctcggatcccaaggagcgcgcgcggcaggccgcggcgacccgc
aagatgtcgccggaggagaaggccgagtaccggaagcgcaagtcccaggagcagctgatc
cggcgcatgggcatcgaccccgagcacggctgggaggcccactacgagatcctcccgggc
aaggagaaggtggtcgccgagctccagaagctggcccagaaggccgacaccgtctatctc
gccaccgatctcgaccgcgagggggaggccatcgcctggcaccttcgcgagactatcggc
ggcgatgacgcgcgctacaagcgcgtggtcttcaacgagatcaccaagaacgccatccag
gaggcgttcaaggaccccggcaccctcaacatgccgcgggtcgaggcccagcaggcgcgg
cgcttcctggaccgtgtggtcggcttcatgctctcgccgctgctgtgggccaagatcgcc
cgcggcctctcggccgggcgggtgcagtcggtggccatgcgcctgatcgtcgagcgcgag
cgcgagatccgcgccttcgtgcccgaggagttctgggacgtccatgccgatctggtgccg
caggtcgaggggggcgacggcgagccggtgcgcttcgagctggtgcgccaggacggcaag
gccttccggcccacctccgaggccgagaccctggagcgcatcgccgcgctcaggaaggcg
tcactcgccattacctcgcgggaagacaagcccacgcggtcgaagcccaacccgcccttc
atcacctcgaccctgcagcaggccgccagcggccggctgggcttctcggtgaagaagacc
atgaccctggcccagcgcctctacgaggcgggctatatcacctacatgcgtaccgactcc
accaacctgtcgaaggatgcggtggagagcgtgcgtgagttcatcggcggcgagtatggc
gagcgctacctgccggaggcgcccaaccgctactccagcaaggagggcgcccaggaggcc
cacgaggcgatccgtccctccgacgttggccgtcgcgccaccgaccttgccggcatggag
cgcgacgccgagcggctctacgagctgatctggcgccagttcgtggcctgccagatgacc
ccggccgagtacctctccagcaccctcaccgtggaggtcgacggctacgagctcaaggcc
aaggggcgcgtgctcaagttcgacggttacacccgcgtgatgaagccggccggcaagaac
gaggaccagtcgctgccggatctcgccgagggtacccccatgaccctggcctccctggac
ccgctgcagcacttcaccaagccgccggcccgctacaccgaggcgagcctggtcaaggag
ctggagaagcgcggcatcggccggccctcgacttatgcctcaatcatctccaccatccag
gaccgcggctacgtcaagctggagaaccggcgcttctatgccgagaagctcggcgatatc
gtcaccgagcgcctcaaggagtccttccccgacctgatggactactccttcacggcgcgc
atggaggatggcctcgacgaggtggccgagggcgagcgcaactggcgtgcgctgctcgat
gccttctacgccgagttccggaaggagctttcggaggccgagagcgaggaggggatgcgc
cccaaccagccggtgcccaccgacatcgactgccccagctgcgggcgcaagatgcagatc
cgtaccgcctccaccggggtcttcctgggcggctccggctacaacctgccgcccaaggag
cgctgcaagaccaccatcgacctgctgcccggcgaggaggcagtggccgccgacgccgac
gaggaggccgagaccgatgccctgcgggccaagcaccgctgcgggaagtgcggcaccgcc
atggacagctacctgatcgacgagactcgcaagctgcacatctgcggcaacagcccggac
tgcgacggctacgagatcgagcagggcaggttccgcatcaagggctatgacggcccgacc
atcgagtgcgacaagtgcggcagcgagatgcagctcaagtccgggcgcttcggcaagtac
ttcggctgcaccaacagcgagtgcaagaacacccgcaagctgctgcgcagcggcgaggtg
gcgccgcccaagatggatcccatcgacatgccggagctggcctgccagaaggtcgatgac
cactacgtgctgcgcgacggggccagcggcctgttcctggcggcgagcaagttccccaag
aaccgcgagacgcgcccgcccctggtccgcgagctcaaggcccacgccgaggagctcccc
gagaagtatcgctacctgctcgacgcccccagcgaggatccggatggccgcccggcgcag
atccgcttctcgcgcaaggccaaggagcagttcgtgatgaccgacgaggagggcaaggcc
accggctggaaggccaccttcgacggcagccgctggcaggtggaggacaagcgcaagtga
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