Halorussus limi: M0R89_01220
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Entry
M0R89_01220 CDS
T08097
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halx
Halorussus limi
Brite
KEGG Orthology (KO) [BR:
halx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halx03016
]
M0R89_01220
Enzymes [BR:
halx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
M0R89_01220
Transfer RNA biogenesis [BR:
halx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
M0R89_01220
Prokaryotic type
tRNA splicing ligases
M0R89_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UPV74706
UniProt:
A0A8U0HVI2
LinkDB
All DBs
Position
242359..243837
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AA seq
492 aa
AA seq
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MTTDDASDTYDAGDVTLHKVRDYVWEIPRDGEMRVPARVLASESLLDQIADDKTLEQLKN
STHLPGVRKYNVCMPDGHQGYGFPVGGVAGIDAEEGCISPGAVGYDINCGVRMMKTNLSY
EDVQGREEELLDALFANVPSGLGGGGIVEGDMDAVEAILDRGMEWALEEGWAVEEDLAHC
EDEGVRHDSDPAKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDTYLDDVADAYGLEEGQI
VVLIHCGSRGLGHQVCSDYLRDIEKAHAGMLSQLPDKELAAAPAGSQLAEDYYDAMCACI
NFAWVNRQLIMHRTRQVFEKVFDSDWESLGMDLLYDVSHNIAKKETHTVEDGEERELYVH
RKGATRAFPAGHEEVPGAYLDVGQPIIIPGSMGAGSYVLRGGEDSMDLTFGSTAHGAGRT
MSRTQAKQDYWGGDVQDELEQEHIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDK
VARTFPVCNIKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgacgacgcgagcgacacctacgacgcgggcgacgtcacgctccacaaggtc
cgtgactacgtctgggagattccccgagatggcgagatgcgcgtcccggcgcgggtgctg
gccagcgagagcctgctcgaccagatagccgacgacaagacgctcgaacagctcaaaaac
tcgacgcacctgccgggcgtccggaagtacaacgtctgcatgcccgacggccatcagggc
tacggcttcccggtcggcggcgtggccggaatcgacgccgaggagggctgtatctcgccg
ggggcggtcggctacgacatcaactgcggcgtccggatgatgaagacgaacctctcctac
gaggacgtgcagggccgcgaggaggagcttttggacgccctgttcgcgaacgttccgtcg
ggcctcggcggcggcggcatcgtcgagggcgacatggacgccgtggaggccatcctcgac
cgcgggatggagtgggcgctcgaagagggatgggcagtcgaggaagacttggctcactgc
gaggacgagggcgtgcgccacgacagcgaccccgcgaaagtgtctcagaaggcgaaagac
agggggaagaaccaaatcgggagcctcgggtcgggcaaccacttcctcgaagtccagcgc
gtgaccgacacgtatctcgacgacgtggccgacgcctacggactggaggagggtcaaatc
gtcgtcctcatccactgcgggagccgcggactcggccatcaggtctgtagcgactacctc
cgggacatcgagaaggcccacgccgggatgctctcgcaactcccggacaaggaactcgcg
gccgcgcccgccgggagccaactcgccgaggactactacgacgcgatgtgcgcgtgcatc
aacttcgcgtgggtgaaccgacaactcatcatgcaccgcacgcggcaggtgttcgagaag
gtgttcgactcggactgggagtcgctgggcatggacctgctctacgacgtgtcccacaac
atcgccaagaaggagacccacacggtggaggacggagaggagcgcgaactctacgtccac
cggaagggcgcgaccagagccttccccgcgggccacgaggaggtccccggcgcgtacctc
gacgtgggccagccgatcatcatccccgggagcatgggcgcggggagctacgtcctccgg
ggcggcgaggactcgatggacctgaccttcgggtcgacggcccacggcgcgggccggacg
atgagtcggacgcaggccaagcaggactactggggcggcgacgtgcaggacgaactggag
caggaacatatctacgtcaaggctcagagcggtgccacggtggccgaggaagcgccgggc
gtctacaaggacgtggacgaagtcgtccgggtctcggacgcgctgggcatcggcgacaag
gttgcccggacgttccccgtctgtaacatcaaggggtag
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