Halorussus limi: M0R89_02160 Help Entry M0R89_02160       CDS       T08097                                  Name (GenBank) CDC48 family AAA ATPase   KO K13525   transitional endoplasmic reticulum ATPase Organism halx  Halorussus limi Pathway halx04141   Protein processing in endoplasmic reticulum Brite KEGG Orthology (KO) [BR:halx00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     M0R89_02160  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:halx03019]     M0R89_02160    03009 Ribosome biogenesis [BR:halx03009]     M0R89_02160    04131 Membrane trafficking [BR:halx04131]     M0R89_02160   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:halx04147]     M0R89_02160 Messenger RNA biogenesis [BR:halx03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Ran-mediated transport factors      M0R89_02160 Ribosome biogenesis [BR:halx03009]  Eukaryotic type   Pre-60S particles    Ribosome quality control proteins     M0R89_02160 Membrane trafficking [BR:halx04131]  SNARE   SNARE associated proteins    Others     M0R89_02160  Autophagy   Aggrephagy    Other aggrephagy associated proteins     M0R89_02160 Exosome [BR:halx04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    M0R89_02160 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA CDC48_N AAA_lid_3 CDC48_2 AAA_16 RuvB_N AAA_5 AAA_22 TIP49 AAA_2 AAA_33 AAA_14 nSTAND3 NPHP3_N RNA_helicase AAA_28 IstB_IS21 Sigma54_activat Mg_chelatase AAA_7 ABC_tran AAA_18 AAA_17 ATPase DUF815 AAA_3 NB-ARC Parvo_NS1 AAA_24 AAA_30 TsaE AAA_11 SLFN-g3_helicase PhoH Vps4_C NACHT Sigma54_activ_2 ResIII IPT DUF6985 Motif Other DBs NCBI-ProteinID:  UPV74886 UniProt:  A0A8U0HW14 LinkDB All DBs Position 413910..416135 Genome browser AA seq 741 aa AA seqDB search MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGDTTAAKVWRADRQDWN TDTVRIDGFTRQNADVGIGERVEIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETDPDGVCLITEDTEVELREEPISGFE KTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSIIFIDELDSIAPKRED VTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDET GREEILQIHTRGMPLSDDVALDSLANDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE DIPPSLIDRMIVKREDFNGALNEVEPSAMREVLVELPKISWDDVGGLEEAQQQVKESVEW PLSSPERFQRLGINPPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES EKAIRQTFRKARQVSPTVIFFDELDSLAPSRSQEMGSNVSERVVNQLLTELDGLEEKGDV MVIGATNRPDMIDPALIRSGRFDRLVMIGQPDEEGREQILKIHTDDTPLSADVSLRELAE ITDGYVGSDLESIAREAAIEALREDDDATEVGMSHFRQAMENVRPTITEDLLDYYEQMED EFKGGSSSPTQGRRGGRIGFQ NT seq 2226 nt NT seq  +upstreamnt  +downstreamnt atgaatgaagtccaactagaggtggcaaaggcgtacccgaacgattcgggtcgcggtatc gcccgtctcgacccggacacgctgttgcatctgaagctcagtccgggcgacatcatcgaa atcgaaggcggtgacacgaccgccgcgaaggtctggcgcgcggaccgtcaggactggaac accgacacggttcgcatcgacgggttcacccgacagaacgccgacgtgggcatcggcgag cgcgtcgagattcggaaggccgaggccgagaaggccgacaaactggtcctcgcgccgccc gaggaggccagcgtgcagttcggttccgacgccgcagggatggtcaagcgccagattctc aagcgcccggtggtcgagcgcgacatcgtccccgtgatgtcctcgaccaaccacccgttc atgcggtcgcccggacaggcgattccgctcatcgcggtcgagaccgaccccgacggcgtc tgtctcatcaccgaggacaccgaggtcgagttgcgagaagaacccatctctggcttcgag aagaccggcggcggcatcacctacgaggacatcggcggtctcgaaaacgagattcaacgc gtccgggagatggtcgaactcccgatgaagcacccccagattttcaagaaactgggcatc gaaccgccgcagggtgtcctgctccacggcccgcccggcacgggcaagaccctgctcgcc aaggcggtcgccaacgagacgtccgcgagtttcttctccatcgcgggcccggagataatc tctaagtactacggcgagtccgagcaacaactccgggaaatcttcgaggacgccaccgag gagtcgccctctatcatcttcatcgacgagttggactccatcgcacccaagcgcgaggac gtgaccggcgaggtcgaacgccgcgtcgtggcccaactgctgaccatgatggacggtctc gaatcccgcgggcaggtcatcgtcatcgcggcgaccaaccgcgtggactcggtcgacccc gcgctccggcgtccgggtcggttcgaccgcgaaatcgaaatcggcgtgccggacgagacc ggccgcgaggagattctccagattcacacccgggggatgcccctctcggacgacgtggcg ctggactcgctggccaacgacacccacggcttcgtcggcgcggacatcgagagcctgacg aaggaggccgcgatgaaggccctgcggcgctacctccccgaaatcgacctcgacgaggag gacattccgccgagcctcatcgaccggatgatagtcaagcgcgaggacttcaacggcgcg ctcaacgaggtcgaaccctccgcgatgcgcgaggtcctcgtggaactgcccaaaatctcg tgggatgacgtgggcggtctcgaagaggcccaacagcaggtcaaagagagcgtcgagtgg cccctctcgtcgcccgagcggttccaacggctgggtatcaacccgccgagcggcgtcctg ctctacggcccgcccggcacgggtaagaccctgatggcgaaggcggtggccaacgagacc aacgccaacttcatctcggtccgcggcccgcaactcctcagcaagtgggtcggcgagtcc gagaaggccatccgccagacgttccggaaggcccggcaggtctccccgaccgtcatcttc ttcgacgagttggacagcctcgcgccctcccggagtcaggagatgggcagtaacgtctcc gagcgcgtggtcaaccaactgctcacggaactcgacggactggaggagaagggcgacgtc atggtcatcggcgcgaccaaccgcccggacatgatagacccggcgctcatccggtcgggc cggttcgaccgcctcgtgatgatcggtcaacccgacgaggagggccgcgaacagattctg aagattcacacggacgacacgccgctgtcggccgacgtgagcctgcgcgaactcgcggaa atcaccgacggctacgtgggtagcgacctcgaatccatcgcccgcgaggccgccatcgag gcgctccgcgaggacgacgacgccaccgaggtcggcatgagccacttccggcaggcgatg gagaacgtccggcccaccatcaccgaagacctgctcgactactacgagcagatggaagac gagttcaagggcgggtcgtcgagtccgacgcagggtcggcgcggcggccgtatcggcttc caataa

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