KEGG   Natrinema halophilum: HYG82_02635
Entry
HYG82_02635       CDS       T06745                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
haly  Natrinema halophilum
Pathway
haly03030  DNA replication
haly03410  Base excision repair
haly03420  Nucleotide excision repair
haly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYG82_02635
   03410 Base excision repair
    HYG82_02635
   03420 Nucleotide excision repair
    HYG82_02635
   03430 Mismatch repair
    HYG82_02635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:haly03032]
    HYG82_02635
   03400 DNA repair and recombination proteins [BR:haly03400]
    HYG82_02635
Enzymes [BR:haly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYG82_02635
    6.5.1.6  DNA ligase (ATP or NAD+)
     HYG82_02635
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HYG82_02635
DNA replication proteins [BR:haly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HYG82_02635
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HYG82_02635
DNA repair and recombination proteins [BR:haly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HYG82_02635
   NER (nucleotide excision repair)
    Other NER factors
     HYG82_02635
   MMR (mismatch excision repair)
    Other MMR factors
     HYG82_02635
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QLG47817
UniProt: A0A7D5KPZ4
LinkDB
Position
complement(566179..567954)
AA seq 591 aa
MEFATFAEHAGTIEAETADLETVVHVRDLLSEAATADDGAERGPQTLEIVARFAQGRVFP
AWDSTTLDIGPRTCYEAIARAAGTNVRADDVEDRLATVGEIGDVAAGYDFGGQQGLGAFV
NGGGGNADDDSDTAGRSDDLAVREVFDVLSDLAAAEGSGSQDRKVALLFGLFNRCSSDEA
RYLARLVLSEMRIGVGEGTVRDAIADAFDVPVDRVERALQVSNDYGRVARVAKDEGVEGV
DAMDLEVGRPVQAMLAQAGTVTDALEEWDEAGVEWKYDGARIQLHYDPFDGSGSGETCVF
SRNMEDVTDALPEVVEFAENRLEEPAILDGEVVAVDGDGSPLPFQEVLKRFRRKHDVAKA
REDVTVRPVFFDCLHADGADLLEEPLSARHERLRSVLVDSDADADTIDDDDIRGLSLLWQ
TGDPDEIESIDADALQAGHEGIMLKNPDAAYSPGRRGKHWRKRKPDVETLDCVVTGAEWG
EGRRATFLGTFELSVRAGEDLETVGKVATGITDEKLAELTELLEPHVTVEEGQEVDVEPA
VVFEVGYEEIQSSPTYSSGYALRFPRFQGVRSDKSPEDADTLERLERLRAQ
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgagcacgccgggacgatcgaagccgaaaccgcggacctc
gagaccgttgtgcacgtccgggatctgctctcggaagcggctaccgcagacgatggcgcg
gagagaggcccgcagaccctcgagatagtcgcgcgtttcgctcaggggcgggtgttccct
gcctgggactcgacgacgctcgacatcggaccgaggacctgttacgaagcgatcgcccgt
gcggcggggacgaacgtgcgcgcagatgacgtcgaggatcgcctcgcgacggtcggcgag
atcggagacgttgcggccggctacgatttcggcggccagcaagggctgggggccttcgtg
aacggtggcggtggaaatgccgacgatgatagcgatacagccggtcgcagcgacgacctc
gccgtccgtgaggtcttcgacgtgctctccgaccttgcggccgccgagggatctggcagc
caggatcgcaaggtcgccctgctcttcgggctgttcaaccgctgttcgagcgacgaagct
cgatacctcgctcggctcgtcctctccgagatgcgcatcggggtcggcgaaggaacggtt
cgagacgcgatcgctgacgcgttcgacgttcccgtggatcgggtcgagcgcgccctgcag
gtttcgaacgactacggtcgggtagcccgggtggcgaaggacgaaggggtcgagggggtg
gacgcgatggacctcgaggtgggtcgacccgttcaggcgatgcttgcccaggcggggacg
gtgaccgacgcgctcgaggagtgggacgaggctggcgtcgagtggaaatacgacggggct
cgaattcagttgcactacgacccattcgacggtagcggatcgggcgaaacctgcgtcttc
tcgagaaacatggaggacgtcaccgatgcgcttcccgaagtggtcgagttcgccgagaac
aggctcgaggaacccgcgattctcgacggggaagtcgtcgcggtcgacggcgacggctcg
ccgttgccgtttcaggaagtgctcaagcgatttcggcggaaacacgacgtcgcgaaagct
cgcgaggacgtcaccgtccgaccggtcttcttcgactgtctgcacgccgacggtgcagac
ctgctcgaggagccgctttcggcccgtcacgagcgactccggtcggtgctcgtcgactcc
gacgcagacgcggataccatcgatgacgacgacatccgggggctctccctcctgtggcaa
accggcgatcccgacgagatcgaatcgatcgacgcggatgcgctccaggccggccacgag
gggattatgctcaagaatcccgacgcagcgtattcgccgggccgtcggggcaagcactgg
cgcaaacgaaaaccggacgtcgagacgctggactgcgtcgtgacgggcgccgaatggggc
gaaggcagacgcgcgacgttcctcggcaccttcgaactgtccgttcgggcgggtgaagac
ctcgagactgtcggcaaggtcgcgaccggaatcacggacgaaaaactcgccgaactcacc
gaactgctcgagccccacgttacggtcgaagaaggccaggaggtagacgtagaacccgca
gtcgtcttcgaggtcggctacgaggagattcaatcctcgccgacctattcgtcgggctac
gcgcttcggtttccgcgctttcagggcgttcgatctgacaagtctcccgaggatgcggac
acgctcgaacggctcgagcggcttcgagcacagtga

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