KEGG   Halomicrobium mukohataei JP60: E5139_00920
Entry
E5139_00920       CDS       T05947                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
halz  Halomicrobium mukohataei JP60
Pathway
halz03030  DNA replication
halz03410  Base excision repair
halz03420  Nucleotide excision repair
halz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:halz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    E5139_00920
   03410 Base excision repair
    E5139_00920
   03420 Nucleotide excision repair
    E5139_00920
   03430 Mismatch repair
    E5139_00920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:halz03032]
    E5139_00920
   03400 DNA repair and recombination proteins [BR:halz03400]
    E5139_00920
Enzymes [BR:halz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E5139_00920
    6.5.1.6  DNA ligase (ATP or NAD+)
     E5139_00920
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     E5139_00920
DNA replication proteins [BR:halz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    E5139_00920
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     E5139_00920
DNA repair and recombination proteins [BR:halz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     E5139_00920
   NER (nucleotide excision repair)
    Other NER factors
     E5139_00920
   MMR (mismatch excision repair)
    Other MMR factors
     E5139_00920
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Lambda_tail_I RNA_ligase
Other DBs
NCBI-ProteinID: QCD64261
UniProt: A0A4D6KE39
LinkDB
Position
159132..160793
AA seq 553 aa
MEFAEFAATAAEIEGESADIATTELVAGLLADADEDLPILTRLVQGRVFPAYEATKLDIG
PKLCYEALARAAGRNVAVDDIEARVADVGEIGAVATELDLGGQQGLAAFGAGSQSPLTVA
EVADELAAIASASGSGSHDTKVETLFGLFNRASDAEARYLARIVLSEMRIGVGEGTVRDA
IAAAFDAPVDAVESALQVTNDYGNVARVARDEGADGLSDLELTIGRPVKAMLAQAGTVTE
ALEDWETAAVEWKYDGARVQVHDDGETVRLFSRNMEDVTDPLPEVVSAVEDAVDGPAILD
GEVVAVDGDGDPLPFQEVLRRFRRKHDVARASETVGVRLHAFDCLHADGRDLLDAPLVDR
RDALDAVLGDTDAVRSTFWLADDTERIEDIADEALAAGHEGIMLKDPDSTYSPGKRGKHW
RKRKPDVETLDLVVTGAQWGEGRRATYLGTFELSARTDDGYAPVGNVATGITDEQLATLT
ELLEPHVTRETGQRVEIEPAVVFEVGYEEIQRSSTYESGYALRFPRFVEIRSDKAVADGD
TLERVERLAARQG
NT seq 1662 nt   +upstreamnt  +downstreamnt
atggagttcgccgagttcgccgcgacggcggccgagatcgagggcgagagcgccgacatc
gcgacgaccgagctggtggccgggctgctcgcagacgccgacgaggacctcccgatcctc
acgcggctcgtgcagggacgggtgttcccggcctacgaggcgacgaagctcgacatcggc
ccgaagctgtgttacgaggccctggcgcgggcggcgggccgaaacgtcgccgtcgacgac
atcgaggcccgcgtcgcggacgtgggtgagatcggtgccgtcgcgaccgagctcgacctg
ggcggccagcagggacttgccgccttcggcgctggctcgcagtcgcccctgaccgtcgcc
gaagtggcggacgaactcgcggccatcgcgtcggccagcggttcggggagccacgacacg
aaagtcgagacgctgtttggcctgttcaaccgcgccagcgacgcggaggcccgctacctc
gcccggatcgtcctctcggagatgcggatcggcgtcggcgaggggacggtgcgcgacgcc
atcgcggcggccttcgacgcgccggtcgacgccgtcgagagcgcgctacaggtcaccaac
gactacgggaacgtcgcccgggtggcccgagacgagggggccgacgggctgtccgacctc
gaactgacgatcggacggccggtcaaggcgatgctcgcacaggccggcaccgtgaccgag
gccctcgaagactgggagaccgcagcggtcgagtggaagtacgacggcgcgcgggtccag
gtccacgacgacggcgagacggtccggctgttctctcggaacatggaggacgtgaccgat
ccgctgccggaggtggtgtcggccgtcgaggacgccgtcgacggtccggccatcctcgac
ggcgaggtcgtcgcggtcgacggcgacggcgatccgctccccttccaggaggtcctgcga
cgcttccggcgcaaacacgacgtggcccgtgccagcgagaccgtcggcgttcgcctgcac
gcgttcgactgcctccacgccgacggtcgcgacctgctggacgcccccctcgtcgaccga
cgggacgcgctcgacgcggtgcttggcgacaccgacgccgtccggtcgacgttctggctc
gcagacgacaccgaacggatcgaggacatcgccgacgaggcgctggccgccggccacgaa
gggatcatgctgaaagatcccgactcgacgtactcccctggcaagcggggcaaacactgg
cgcaagcgcaagcccgacgtggagaccctcgacctcgtcgtcaccggtgcacagtggggc
gagggacggcgagcgacctacctggggaccttcgagctgtcggcccggaccgacgacggc
tacgcgcccgtcggcaacgtcgcgaccgggatcaccgacgaacagctggcgacgctgacg
gaactgctggagccacacgtcacccgggagaccggccagcgcgtcgagatcgaaccggcc
gtcgtcttcgaggtcggctacgaggagatccagcgctcgtcgacctacgagtcggggtac
gcgctccggttcccgcggttcgtcgagatccgctcggacaaagccgtcgcggacggcgac
acgctcgaacgggtcgagcggctggccgcccggcaggggtga

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