Halomicrobium mukohataei JP60: E5139_02775
Help
Entry
E5139_02775 CDS
T05947
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
halz
Halomicrobium mukohataei JP60
Brite
KEGG Orthology (KO) [BR:
halz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
halz03016
]
E5139_02775
Enzymes [BR:
halz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E5139_02775
Transfer RNA biogenesis [BR:
halz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E5139_02775
Prokaryotic type
tRNA splicing ligases
E5139_02775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCD64616
UniProt:
A0A4D6KGT3
LinkDB
All DBs
Position
531670..533112
Genome browser
AA seq
480 aa
AA seq
DB search
MIELTGDHTTARVMVEDESLVEENCLDQIRTLIDHPAFTEPVRVMPDTHWGAGAPIGFTM
PLGERIVPNIVGVDVGCGMAATKLGSTLPLSDAERERRVREAIPMGQTVHDYDDAVHLVE
EFPFERANEVFEAFAASFEERFGTAIDPLEFDFEGYDADYFESLCERVLAQQRQSMGYVI
RGVGTLGGGNHFVEFARAQTTGDYWLIVHSGSRYLGKSVAEYWQGKATERRNVATIRDSL
PERYHEYLQFDPTAVSDRDLYEWVTGGKGESHLRKDAIREAFDGGEIEDVFDRLSDLRPD
SGDRNTDLDYLVGREAHGYYVDMLFAQQYARWNRAVMSDRICEVIGVEPVERFQSIHNYV
DFRDLTIRKGATPAREGQRLIVPFNMAEGSLLARGRGNDEWHDTAPHGAGRVMGRGEAHR
TVDMDEFEAAMEGVYSESVVESVRDEAPMAYKSADAIADAIEPTAEVEDWLDAVHNLKAK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaactgacgggtgaccacaccacggcccgggtcatggtcgaggacgagtcgctg
gtcgaggagaactgcctcgaccagatccggacgctgatcgaccaccccgcgttcaccgaa
ccggtccgcgtgatgccagacacccactggggagccggcgcaccgatcggcttcacgatg
ccactcggcgagcgcatcgtccccaacatcgtcggcgtcgacgtgggctgtgggatggcc
gcgacgaagttgggctcgacgctcccgctctcggacgccgagcgcgaacgccgcgtgcgc
gaggcgattccgatgggccagaccgtccacgactacgacgacgcggtccacctggtagag
gagttccccttcgagcgggccaacgaggtcttcgaggcgttcgcggccagcttcgaggag
cggttcggcaccgcgatcgatcccctggagttcgacttcgagggctacgacgccgactac
ttcgagtcgctctgtgagcgggtgctggcccagcaacgccagagcatgggctacgtcatc
cgcggggtcgggacgctgggcggtggcaaccacttcgtggagttcgctcgcgcccagacg
accggggactactggctgatcgtccacagcggctcgcgatacctgggcaagtcggtcgcc
gagtactggcagggcaaagcgaccgagcggcgcaacgtcgcgacgatccgcgattcactc
ccggagcggtaccacgagtaccttcagtttgaccccacggcggtctcggatcgagacctc
tacgagtgggtcaccggcggcaagggcgagtctcacctccggaaagacgccatccgcgag
gcgttcgacggcggcgagatcgaagacgtcttcgaccggctgagcgatctccggcccgac
agcggcgaccgcaacaccgacctcgactacctggtgggccgggaggcccacggctactac
gtcgacatgctgttcgcccagcagtacgcccgctggaaccgcgcggtcatgtccgaccgg
atctgcgaggtcatcggcgtcgagcccgtcgagcgcttccagtcgatccacaactacgtc
gacttccgcgacctgacgatccgcaagggcgcgacgcccgctcgcgagggccagcgactg
atcgtccccttcaacatggccgaggggtcgctgctggcacgcgggcggggcaacgacgag
tggcacgacacggccccccacggcgcgggccgcgtgatgggccgaggcgaggcccaccgc
accgtcgacatggacgagttcgaggcggcgatggagggcgtctactccgagtccgtggtc
gagtcggtccgcgacgaggcaccgatggcctacaagtccgccgacgccatcgccgacgcg
atcgaaccgaccgccgaggtcgaagactggctcgacgccgtccacaacctcaaggcgaag
tag
DBGET
integrated database retrieval system
