Halomicrobium mukohataei JP60: E5139_05970
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Entry
E5139_05970 CDS
T05947
Name
(GenBank) single-stranded DNA binding protein
KO
K07466
replication factor A1
Organism
halz
Halomicrobium mukohataei JP60
Pathway
halz03030
DNA replication
halz03420
Nucleotide excision repair
halz03430
Mismatch repair
halz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
halz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5139_05970
03420 Nucleotide excision repair
E5139_05970
03430 Mismatch repair
E5139_05970
03440 Homologous recombination
E5139_05970
03460 Fanconi anemia pathway
E5139_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
halz03000
]
E5139_05970
03032 DNA replication proteins [BR:
halz03032
]
E5139_05970
03400 DNA repair and recombination proteins [BR:
halz03400
]
E5139_05970
Transcription factors [BR:
halz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
E5139_05970
DNA replication proteins [BR:
halz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
E5139_05970
DNA repair and recombination proteins [BR:
halz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
E5139_05970
MMR (mismatch excision repair)
E5139_05970
DSBR (double strand breaks repair)
HR (homologous recombination)
E5139_05970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
OB_Ssb-like
SHLD2_OB1
OB_2TM_halo
Peptidase_inhib_put
Motif
Other DBs
NCBI-ProteinID:
QCD65208
UniProt:
A0A4D6KA27
LinkDB
All DBs
Position
complement(1177509..1178957)
Genome browser
AA seq
482 aa
AA seq
DB search
MGAIGDIYADLETDEVSEEEFREAVEEKVEQMGGLADEETAAMLLAHELNENEVNTVADI
EPGMNEVKFIAKVMSVGDLRTFERDGDGEDEPDEGRVINVEAADETGSVRLAFWDQEAES
IAEGQLDVGDVLRVAGRPQEGYNGLEVSVDKAEPDADATVDVEPGGGSTIDALSMGQSDV
DVRGVVLDTDSIRTFDRDDGSEGRVANLTIGDETGRVRVTLWDDRADRAEEIDPGTAVEI
VDGYVREREGSLELHVGDHGAVDEIDEEVAFEPDAAAIERVEIGETVDIAGVVRSADPKR
TFDRDDGSEGQVRNVRIQDATGDIRVALWGDKADKEIAPGDEILAADVEIDDGWQDDKEA
SAGWQSTVVVLDGAASAPESGGGDQQTASADGGNESAGLDAFADDGADEHTDDASETAGD
ADATTGETIEFTGTVVQTGDPVVLDDGEETMSVETDERVQLGQEVTARGTLRDDRLDADD
VF
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgataggagacatctacgcggacctcgagacggacgaggtctccgaggaggag
ttccgcgaggccgtcgaggagaaggtcgagcagatgggcgggctcgcagacgaggagacc
gccgcgatgttgctcgcacacgaactcaacgagaacgaggtcaacacggtcgccgacatc
gagccggggatgaacgaggtgaagttcatcgcgaaggtgatgtcggtcggcgatctgcgc
accttcgagcgagacggcgacggtgaggacgaacccgacgagggccgcgtgatcaacgtc
gaggcggccgacgagacgggatcggttcgactggcgttctgggaccaggaagccgagtcc
atcgcagagggacaactcgacgtgggcgacgtgttacgcgtcgccggccggccacaggag
gggtacaacgggctggaagtctccgtcgacaaggccgaacccgacgcggacgcgaccgtc
gacgtcgagccgggcgggggatcgaccatcgacgccctgagcatgggccagtccgacgtc
gacgtgcgcggcgtggtcctcgacaccgactcgattcgaaccttcgaccgcgacgacggc
agcgaagggcgggtcgcgaacctgacgatcggcgacgagaccgggcgagtccgggtgacg
ctgtgggacgaccgggccgaccgcgcagaggagatcgaccccgggacggccgtcgagatc
gtcgacggctacgtccgcgagcgcgaggggagtctcgaactccacgtcggcgaccacggt
gccgtcgacgagatcgacgaggaggtcgccttcgagcccgacgccgccgcgatcgagcgc
gtcgagatcggcgagactgtcgacattgccggggtcgttcgctcggccgatccgaagcga
accttcgaccgcgacgacggcagcgagggccaggttcgtaacgtccggattcaggacgcg
accggcgacatccgcgtcgcgctctggggcgacaaggcggacaaggagatcgcacccggc
gacgagatcctcgccgccgacgtggagatcgacgacgggtggcaagacgacaaggaagcc
tctgcgggctggcagtcgacagtggtcgtcctcgacggtgccgccagtgctccggagagt
ggcggtggtgaccagcagaccgcaagcgccgacggcgggaacgagtccgccgggctggac
gccttcgccgacgacggggccgacgagcacaccgacgacgcgagcgagactgccggcgac
gcagacgcgaccaccggcgagacgatcgagttcaccgggacggtcgtccagaccggcgac
ccggtcgtactcgacgacggcgaagagacgatgagcgtcgagacggacgaacgcgtccag
ctcggtcaggaggtcacggctcgcgggaccctccgagacgaccgactcgacgccgacgac
gtgttctga
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