Halomonas sp. R57-5: HALO0810
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Entry
HALO0810 CDS
T04029
Name
(GenBank) DNA helicase, ATP-dependent, RecQ type, bacterial
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO0810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO0810
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO0810
Enzymes [BR:
ham01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HALO0810
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HALO0810
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HALO0810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
CEP34492
UniProt:
A0A0D6E4U3
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All DBs
Position
I:complement(869137..870975)
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AA seq
612 aa
AA seq
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MHGDTHPTALKVLQEVFGYDSFRDPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLR
EGTAIVISPLIALMQDQVAALQQNGVKAAYLNSSLDYHEAVDVENRLRAGELDLLYVAPE
RLATPRMQMLLEQTRIALFAIDEAHCVSQWGHDFRPEYRQLSQLHQRFPQVPRIALTATA
DVPTRGDIMEHLQLQEAALYNSGFDRPNIRYHIAENQGNAKEQLLRFIREHHDGEAGIVY
CLSRRKVEETAAWLERQGLTALPYHAGLPPEQRQHHQTRFLREDGVVVVATIAFGMGIDK
PDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQDSSAADHQK
RIEQQKLDAMLGLCEIISCRRQALLHYFGDHLDAPCGNCDNCLTPPETWEATVAAQKALS
CVYRTEQRFGVTYLVDVLLGKSNERITRFGHDRISTYGIGKDLSASEWKALFRQLIASGF
LSVDMEGHGGIKLTANAKPVLRGEQSLTLRKPSNKPSKAKTARRGSKSASAPQGHGPLWE
ALRQHRRELAEAQGVPAYVIFHDATLAAMVEQKPQSLAALGAISGIGARKLTDYGEGFLD
VILTHQETEQSS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgacacccacccaacagccctgaaggtgctgcaggaggtatttggctacgac
agctttcgcgacccgcagcaggctatcattgagcatgtaattgctggtggcgatgcgctg
gtattgatgcccaccggcggcggcaagtcgctgtgctatcagatcccagcgctactgcgc
gaaggcaccgcgattgtgatctcaccgctgatcgcgctgatgcaggatcaggtagcggca
cttcagcagaacggggtcaaggcggcctacctgaactccagcctcgattatcacgaggcg
gtcgatgtggaaaaccgcctgcgggcgggcgagttggatcttttgtatgtcgcgcccgag
cggctggccacgccgcgtatgcagatgctgctggagcagacccggattgcgctgttcgcc
attgatgaagcccactgcgtctctcagtggggccacgatttccgcccagagtatcgccag
ctttcccagcttcaccagcgctttccccaagtgccgcgcatcgccctcacggccactgcc
gatgtgcccacccggggcgatatcatggagcatctgcagctccaggaggcggcgctttac
aacagcggctttgaccgacctaacattcgctaccatatcgccgagaatcagggtaacgcc
aaggaacagctgctgcgctttattcgcgagcaccacgacggcgaggcgggtatcgtctac
tgcctttcccggcgcaaggtggaggagaccgccgcctggctggagcgccaggggctgacg
gcactgccctaccacgcggggcttcccccggagcagcgccagcaccaccagacccgcttt
ctgcgtgaagatggcgtggtcgtcgtggctaccatcgcctttggcatgggcatcgacaag
ccggacgtgcgctttgtcgcccacctcaacctgcccaagagcatcgaagcctactaccag
gagaccggccgcgccgggcgcgacggcctgcccgccgatgcctggatggcctacggcctt
caagacgtgatcacgctgcgccagatgcagcaggactccagcgccgctgaccatcaaaag
cgcatcgaacagcagaagctcgacgccatgctgggactatgtgagatcatcagttgccgt
cgccaggcgcttttgcactactttggcgatcatctggacgccccctgcggcaactgcgac
aactgcctcaccccacccgagacctgggaggccaccgtggcggcacaaaaggcgctctcc
tgtgtctaccgcaccgagcagcgtttcggcgtgacctatctcgtggacgtgctactaggc
aaaagcaacgagcgcatcacccgctttggccacgaccgaatcagcacctacggcataggc
aaagacctctccgccagcgagtggaaagcgctctttcgccagctgattgccagcggcttt
ttaagcgtggatatggaggggcacggcggcattaagctcactgccaatgccaagccggtg
ttgcgcggcgagcagagcctcactctgcgcaagccaagcaacaaacccagcaaagccaaa
accgcgcgacggggaagcaaaagcgcttctgcgccccagggccacggcccactgtgggaa
gccctgcgccagcaccgccgggaactggccgaagcccagggcgtaccagcctatgtgatt
tttcacgacgccaccctggctgcaatggtcgagcagaaaccccaaagcctagcggcacta
ggcgcgatctccggcatcggcgcgcgcaaattgacggattacggcgagggctttctggat
gtcattctgacgcatcaggaaaccgagcaaagcagttga
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