Halomonas sp. R57-5: HALO1662
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Entry
HALO1662 CDS
T04029
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HALO1662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO1662
Enzymes [BR:
ham01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HALO1662
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HALO1662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CEP35344
UniProt:
A0A0D6E7S1
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All DBs
Position
I:complement(1793805..1797560)
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AA seq
1251 aa
AA seq
DB search
MSQPAPLNPLSLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGHSVDDDTAFIRPLTPPE
ILVVTFTNAATQELRERIRNRLVEAAEVFRAEDVEGGADPLLLQLRDQYDPATWPACSRR
LALAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQRELEQEVVRDYWRSFYY
PLDSDALGIVTRYWKSPDDLHAPLQRLLPESEALGDEKPEPRETLAATQAERAAQLSELK
APWAAWLDELVPALEEAATRKAFKGQSFNAKSRANWLGALREWCETDADRPALTDAAWKR
MTPDGMADIWKEGAPPCPQAWQALAQLPKALDALPEPRNDLLIHAVQWCRARLEREQERR
AEMGPNDLLTHLDRALKGPNKEALAAQIQRQFPVALIDEFQDTDPIQYRIFNAVYDVASP
RRDSAILLIGDPKQAIYAFRGADIFTYLQARQDTDGRHVTLGTNFRSSRAMVAAVNHCFS
YADQHDAGAFLFRADGGDNPLPFNPVNAKGTKETLVLNGKPLAAMTLWPLESEEPLSKTA
YQTEMAERCASHMAALLEAGRQQQAGFAKAADDSDDNGLTPLAPSDMAVLVNGLQEARAI
RLALASRGIKSVYLSDHDKVFSSPIAPQLAIWLRACAEPQANSRQAEAKLRAALATSVLG
LSLEELDHLNQSELAWEARVEQFSDYHRLWQRQGVLPLVRRLMVDFDIAARLLGEFAEGE
RLLTDLLHLGEMLQHASQELDGEHALIRFLAEAIADPDSHGDSHKLRLESDADLVKVVTI
HKSKGLEYPLVFLPFIANHRPVSDTDLPLRWHDSEGNLQLSLSADEATLATADRERLGED
LRKLYVALTRARHATWLGLAPLKGIENSAIGHLINGGKAIAPGAFTHALGELVEGSDIAL
SDAPEPTALRFTPAPEQQALGHARTPLRPAREQWWIASYSALRTSGAVSGSSTTPLTTPA
PEPTTPQEATTLEVLDEPHDNAINTEAFHLHRFPRGPGPGTFLHGLLEWAGQLGFNKALE
DPAAREDMLRRRVQLRGWQAWHVTLAGWFEELLATPLPLPLLQQQSQPSEGSQVALCELE
SYQVELEFWFTAHHVGTRKLDELVSDHLLPGISRPALDADTLNGMLKGFIDLAFEHEGRF
YVLDWKSNYLGSDDSAYTTDALRDAMLEKRYDLQAALYMLALHRLLKARLPDYDPHQHLG
GSMTVFLRGSRTTARGVHAVPAPVALIEALDALFTGTAADAVSETGLEALV
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccgcccccctcaatccattgagcctcccccttcacggcagccgactgata
gaggccagtgctggcaccggtaaaaccttcaccatcgccctgctttacgtgcgtttggtg
ctcggcggtcacagcgttgacgatgacaccgcgtttatccgcccgctcacgccgccggaa
atcctcgtcgtcaccttcaccaacgccgccacccaagagctacgcgaacgcatccgcaat
cgactggtagaagcagcagaagtatttcgagctgaggacgtagaaggaggggcagatcca
ctactcctccaactccgcgaccaatacgaccccgccacctggcccgcctgctcacggcgc
ttagccctggctgccgagtggatggacgaagctgcggtttccaccatccacagctggtgc
taccgcatgctgcgcgaacacgccttcgacagcggcagcctgttctccctcaacctggaa
aacgaccagcgcgaactggaacaggaagtggtgcgcgactactggcgcagcttctactac
ccgctggacagtgacgccctcggcattgtcactcgctactggaaatcacccgacgacctg
cacgccccgctacaacggctattgcccgaaagcgaagcgctgggcgacgaaaagcccgag
cccagagagaccctggccgccacccaggccgaacgcgccgcccagctcagcgagctcaaa
gccccctgggccgcctggctggacgagctggtacccgccctggaagaggccgccacacgc
aaagccttcaagggccaaagcttcaacgccaaaagccgcgccaactggctaggcgcactg
cgcgagtggtgcgaaacggatgctgaccgccccgcgctcaccgacgccgcttggaaacgc
atgacgccggacggcatggcggatatctggaaagagggcgcaccgccctgcccgcaggca
tggcaagcgctggcacagctaccgaaagcactggatgccctgcccgagccgcgcaacgac
ttgctgattcacgccgtgcagtggtgccgcgcccggctggagcgcgaacaggaacgccgc
gccgagatgggccccaacgacctgctcacccatctggatcgcgccctgaaaggccctaac
aaagaggccctggccgcgcagatccagcgccagttccccgtggcgctgattgacgagttt
caagataccgacccgatccagtaccgcatcttcaacgccgtgtatgacgttgcatcgccc
cgccgcgacagcgccatcctgctgattggcgatcccaaacaggcgatctacgcctttcgc
ggcgcggatatcttcacctacctgcaggcccgccaagacaccgatggccgccacgtcacg
ctaggcaccaacttccgttccagccgcgccatggtagcggcggtcaaccactgcttcagc
tacgctgaccagcacgatgccggcgcctttctgttccgtgccgatggcggcgacaacccg
ctgccgttcaaccctgtcaacgccaaaggcaccaaggagacgctggtactcaacggcaaa
ccgctagcagctatgactctgtggccacttgaaagcgaagagccgctttccaaaaccgcc
taccaaaccgagatggccgagcgctgcgcctcgcacatggccgcacttctggaagcaggc
cgacaacagcaagcgggctttgcgaaagccgctgatgacagtgacgataacggactcact
ccgctggccccctcggacatggcagtgttggtcaacggcctacaggaagcccgggcgatt
cgactggcgctggccagccgaggcattaagagcgtctacctttccgatcacgacaaggtg
ttcagttcccccattgccccgcagctagccatttggctgcgcgcctgcgccgaaccccag
gccaactcccgccaggcggaagccaagctgcgcgccgccctggcaacatcagtacttggg
ctaagtcttgaagagttagaccacctcaaccagagcgagctggcctgggaagcgcgggtc
gagcagttcagcgactaccaccgcctgtggcagcgccaaggtgtgctgccgctggtgcgc
cgtttgatggtcgattttgatatcgccgcgcggctactgggcgagttcgccgagggtgag
cgtttgctaaccgacctgctccacctgggtgaaatgctgcagcacgccagccaggaactg
gatggcgaacacgcgctgattcgctttctggccgaagccattgccgacccggatagccac
ggcgacagccacaagctgcgcctcgagagcgatgccgatctggtcaaggtagtgaccatt
cacaaatccaaggggttggagtacccgctggtgttcctgccgtttatcgccaaccaccgc
ccggtcagcgacaccgacctgccgctgcgctggcacgatagcgaaggcaacctgcaactc
agcctaagcgccgatgaagcaacgctggccaccgccgaccgtgaacggctgggcgaagac
ctgcgcaagctctacgtggcgctcacccgcgcccgccacgccacctggctggggctggcg
ccgctaaaaggcatcgagaacagcgccatcggccacttgatcaacggcggcaaggccatc
gcccccggcgcgtttacccacgcgctaggcgagctggtggaaggcagcgatattgcgcta
agtgacgccccggaacccaccgcgctgcgcttcaccccggcgccggagcagcaggcactg
ggccacgcccgcaccccgctacgccccgctcgagaacagtggtggatcgccagctactcg
gcgctgcgtacttctggggccgtctctggatctagcaccaccccgctgacaacgcccgcg
ccggaacccaccaccccccaggaagccaccaccctggaagtgctggacgagccccacgac
aacgccatcaacaccgaagcgtttcacctgcaccggtttccacgtggcccaggccccggc
accttcctgcatggattgctggagtgggcgggccaactgggcttcaacaaagcgctagaa
gaccccgctgcccgagaagatatgctgcggcggcgcgtgcagctgcgcggctggcaggcg
tggcacgtcaccctggcgggctggtttgaagagctgctcgccacgccgcttcccctgcca
ctcctacaacaacagtcacagcccagcgaaggcagccaggtggcgctatgcgaactcgaa
agctatcaggtagagctggagttttggtttaccgcgcaccatgtaggaacccgcaagctg
gacgaactggtcagtgaccacttactgcctggaatatcgcgccccgcgctggatgccgac
accctcaacggcatgctcaagggctttatcgacctcgcctttgagcatgaaggccgcttc
tatgtgctcgactggaaatccaactacctgggtagcgacgacagcgcctataccactgac
gctctgcgcgatgccatgctcgaaaagcgctacgacctgcaagcagctctttatatgctc
gccctccatcggctgctgaaagcgcgcctgcccgactacgacccgcaccaacacctgggc
ggctcgatgacggtatttctgcgcggcagccgcaccaccgcccgcggcgtacacgctgtg
cctgcgccggtcgcattgattgaagcactggatgcactgtttacaggcacggcagcagat
gcagtatcagaaacaggcctagaggcgttggtatga
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