Halomonas sp. R57-5: HALO1875
Help
Entry
HALO1875 CDS
T04029
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ham
Halomonas sp. R57-5
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ham03016
]
HALO1875
Enzymes [BR:
ham01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HALO1875
Transfer RNA biogenesis [BR:
ham03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HALO1875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
CEP35557
UniProt:
A0A0D6E7U6
LinkDB
All DBs
Position
I:2032774..2033904
Genome browser
AA seq
376 aa
AA seq
DB search
MSSLTPSYQWLDTPDALDAACEQVADAAVIALDTEFFRENTFFPVPALIQFTAGEEAYLI
DPVAVPCTDKFRALLQNSAIKLLHACSEDLEVFQHWAGVLPEPLIDTQVVQGFLGENPGM
GYQKLVEFWVGETLPKEETRSNWLVRPLSPAQCHYAALDVIYLLKVWTLQAEKLAILGRR
EWVDAECTSLIEQAGRSVDNDQQWYTRQRQLWRLTPRQMEAYRLMTTWREGETRRRNLPR
NWLISDKLLFAIAEKMPSNRFELAEVEGVKPMLIKKEGDALLAMVKQAQHCDEIALPKRW
PDPMHPTFKSRFKALKKVVTGKADDLGVAPEMLMRRRDIETLVMQDLAGEPFTWPTGWRG
EYLNGALAQALEERPS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctctcttactccctcttatcaatggcttgatacccctgatgcgcttgatgcggca
tgcgaacaagtagccgatgcggccgtgattgctctggataccgagtttttccgagagaac
actttttttccagtccccgcgctgattcaattcaccgccggtgaagaggcttatctgatt
gacccggtggccgtcccgtgtaccgataaatttcgcgctctgctgcagaatagtgccatc
aagttgctgcacgcttgcagcgaagatctagaagtcttccaacactgggcgggggtattg
ccagagccgctcattgacacccaggtggtacaaggcttcttgggcgaaaaccctggcatg
gggtatcaaaagctggtcgaattttgggtcggtgaaaccctgccgaaagaggagacccgc
tcgaattggctagtgcgcccgctgtcgcctgcgcagtgccactacgccgcgctggacgtt
atctatttactcaaagtctggacgctgcaggctgaaaagcttgccatattggggcgccgt
gagtgggtcgacgctgagtgcacaagcctaattgaacaggcgggccgcagcgttgataac
gaccaacagtggtatacccgccaacgccagctatggcgcctcacgccccgtcaaatggaa
gcgtatcggctgatgaccacctggcgtgaaggcgaaacgcgccgtcgcaacttgccgcgt
aattggttgattagtgacaagctgctgtttgcgatcgccgaaaagatgccgagcaatcgc
ttcgagctcgccgaggtggaaggcgttaagccgatgctcatcaaaaaagagggcgatgca
ctgctggcgatggtcaaacaggcccagcactgcgatgaaatagccctgcccaagcgctgg
ccggaccccatgcacccgacgttcaagtcacgctttaaagcgctcaagaaggtggtaacc
ggcaaagccgatgacttgggggtggcaccggaaatgctgatgcgccgccgggatattgaa
acactggtgatgcaggacttggcgggtgagcctttcacttggccgaccggttggcggggc
gagtatttgaatggtgcgctggcccaagcccttgaggaacgaccatcatga
DBGET
integrated database retrieval system
