Halomonas sp. R57-5: HALO2065
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Entry
HALO2065 CDS
T04029
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO2065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ham03021
]
HALO2065
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO2065
Transcription machinery [BR:
ham03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HALO2065
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HALO2065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
AAA_25
AAA_19
ABC_tran
AAA_22
AAA_16
NACHT
AAA
AAA_30
nSTAND_NTPase5
ResIII
NPHP3_N
ATPase_2
cobW
NB-ARC
AAA_24
nSTAND3
Viral_helicase1
Spore_III_AA
Rad17
AAA_17
AAA_18
NTPase_1
AAA_11
Mor
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
CEP35747
LinkDB
All DBs
Position
I:2247898..2248854
Genome browser
AA seq
318 aa
AA seq
DB search
MTRKTLGLKAKREIDAKPADDVEDQFPNDPEKRFLNGVAIHPSPRIYLEPGSQQRTVRAM
DLITPIGMGQRGLIVAPPGSGKTTMLKHICQAVAEAHPDIKLYALLIDERPEEVTDFKRS
VSAEVHASSSDESYTHHVRMADKLLETARRQAGDGHNVMIVIDSLTRLSRVHNAEQRGNG
RTMSGGLDSRAMEIPRKLFGAARKIENGGSLTILATVLVDTGSRMDQVIFEEFKGTGNME
LVLSRDVANQRIFPAIDIAKSSTRREELLIDAKDIEKVRTLRRGLTTLKPVEGAQKLLEL
LDKYPTNAELLDAFLPDS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgacgagaaaaacactaggtttgaaggcgaaaagagagatagatgccaagcccgccgac
gacgttgaagatcaattccctaatgatcccgaaaaacgttttctaaatggcgtcgctatt
catccttccccacgcatttatttagagcctggctctcagcagcgtactgtgcgggcgatg
gatctgattacgcccattgggatggggcagcgagggttgattgtggcgccgccgggctct
ggcaaaacgacgatgttaaaacatatctgtcaggccgtagcagaagctcatcctgacata
aagctgtatgccttgctgattgatgagcgcccggaagaagtgaccgattttaagcgcagt
gtatcggcagaagtacatgcatcgtcttcagatgaaagctacacacaccatgtgcgtatg
gccgataagcttcttgagacggcgcgtaggcaagcaggcgacggccataatgtgatgatt
gtgatcgattctttgaccagactctcgcgcgttcataatgccgagcagcgaggtaatggt
cgcactatgtcgggtgggctggatagccgagcgatggaaataccccggaaattgtttggc
gccgcgagaaagatcgaaaacggcggatcgctcaccattctggccaccgtgctggtggat
acgggaagccgtatggatcaggtgattttcgaggagttcaagggcacgggcaatatggaa
ctggtgttatcccgggatgtggccaatcaacggattttccctgcaatcgatattgccaaa
agcagtacccgtcgcgaagagcttttgattgatgcaaaagatattgaaaaagtaagaaca
ttgcgtagaggtttgacaacgcttaagccagtagaaggcgcgcagaagttacttgagtta
ttggataaatatcccactaatgccgagctattagatgcgtttttgccagattcgtga
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