Halomonas sp. R57-5: HALO2269
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Entry
HALO2269 CDS
T04029
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO2269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO2269
Enzymes [BR:
ham01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HALO2269
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HALO2269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
HI1480
Gag_p24
HEM4
AAA_22
Tower
COMPASS-Shg1
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
CEP35951
LinkDB
All DBs
Position
I:complement(2450447..2451703)
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AA seq
418 aa
AA seq
DB search
MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLNTGKRPAKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDAL
KAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQ
NLLFSATFSNEIQALAQQLLDNPAMIEVAPRNATAEKIEQAIYRVDREKKRELLAHLIQQ
NGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGKAVSLVCVDEDALLGSIER
LIKQTLPKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPDGQSANTGGERKRRVRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggcctgcacgccgatttgttacgcgctgtcacagcgcaaggt
tacaccgaacctaccccgatacaacgacaggccatccccgtcgtattagaaggtcgtgac
atgctagccagcgcccaaaccggcactggcaaaaccgctggttttacgctgccaatgctg
caacgcctgaacaccggcaaacgacctgcgaaacgtcaggtacgggcgctggtgctaacc
ccgacccgtgagcttgccgctcaagtaggcgaaagcgtgtcgacctatggccagcatctg
gccctgcgctctcacattatttttggcggcgttggccaacagcctcaaatcgatgcacta
aaagccggcttggatgtactcgttgccacccccggtcgactgctggatcttcaccaacag
gggcatgtagacctctcctgcgttgagattctagtgcttgatgaagcggatcgcatgcta
gatatgggcttcatccatgatattaaacgcctgctgcggctggtgcctaaaaagcgccaa
aacctactgttctcagcaacgttctctaacgagatccaagccctagcacaacagctgctg
gataacccggcgatgattgaagtagcgccgcgcaatgccaccgccgagaaaattgagcag
gctatttaccgcgttgatcgcgagaagaagcgcgagcttctggcccacttaatccagcaa
aacggctggtttcaagtgctggtatttacgcgcactaaacatggcgctaaccgcttggcc
gagcagctctccaagcaggatattccctccatggcgatccatggcaacaaaagtcagggg
gcgcgcacccgcgcgttaaccgcctttaagagtggcgacctgcaggtactcgtggccacc
gatattgctgcccgtggtctggatatcaatgagctgccccacgtcgtcaattttgatctc
cccaatgtggcggaagattacgtccaccgcattggccgtaccggccgtgctggcagcaat
ggcaaagccgtctcgctggtgtgtgttgacgaagacgccctgctgggcagtattgagcga
ctcatcaaacagacgctgccaaaacatattgaaccaggctttgagcccgaccccagcatc
aaacctgagcctatcgagaatggccgacgcaatcagcgccagccgcgtgccaagcgcaaa
cccgatggccagagtgccaatacgggtggtgagcgtaaacgacgcgttcgccgctag
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