Halomonas sp. R57-5: HALO2370
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Entry
HALO2370 CDS
T04029
Name
(GenBank) Excinuclease cho
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03030
DNA replication
ham03430
Mismatch repair
ham03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALO2370
03430 Mismatch repair
HALO2370
03440 Homologous recombination
HALO2370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ham03032
]
HALO2370
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO2370
Enzymes [BR:
ham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HALO2370
DNA replication proteins [BR:
ham03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HALO2370
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HALO2370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
Rv2179c-like
GIY-YIG
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CEP36052
LinkDB
All DBs
Position
I:complement(2568274..2569659)
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AA seq
461 aa
AA seq
DB search
MSETALIFVDVETTGTRATRDRITEIAALKVINGELIDRWSSLIYPECKVPAQITQLTGI
CDDMLVDAPRFAQIAESLREWLGDGQLVAHNARFDYSFLRNEFKRAGQDFRAPLICTLRL
SRRIAPQQRQHNLKALLNRYGITPTRHHRAGDDVDALWSLWQAWQAEHSDEAWQRLLGDE
RRHRTLPAHLDSAQLQDLPARPGVYLFYGHNRLPLYVGKSVNLRSRVLGHFQRDHQDDKE
MRLAQQVQHIEWEETAGDLGAQLREAQLVKTLMPIMNRQLRKQRKLTTXHWAEEADHPEL
LSGNALTQPISGTLYGLFRNAREAKNALRAIAEEQQLCPRVLGLEKGKGRCFANQVGKCR
GACNGQESIAAHTQRAQKALTQLQVNVWPWPGSIAIEEKSAGATGSAWHVVRQWCYLGSA
TSFNNAQTLAETSASFDVDSYRILNRFLRYPEQHGLTVTPL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacagctttaatttttgttgatgttgagactactggcacccgcgcgacgcgg
gatcgaatcaccgaaatagccgcccttaaagtcatcaatggcgagctgattgaccgctgg
tcgagcttgatctatccggagtgcaaggtacccgcgcagatcacccagttgaccgggatt
tgcgacgacatgcttgttgatgcgccacgctttgcacagatagccgagtcgcttcgagag
tggttgggcgacgggcaattagtggcccacaatgcgcgctttgactacagttttctgcgc
aacgaatttaagcgtgctgggcaggatttccgggcgccgctgatatgcacactgcggtta
tcaagacggatagcgccccaacagcgtcagcacaatctgaaagcgctgcttaaccgctac
ggcattacacccacccgccaccaccgtgccggagacgatgtggatgcactgtggtcgctg
tggcaggcatggcaggcagaacacagcgacgaagcgtggcagcgcctgctgggcgatgaa
cgccgccaccgcacgctacctgcccatctggatagcgcccagttgcaagatttgcccgcc
cgccctggcgtctacctgttttatggccacaaccggctgcccctgtatgtgggcaaaagc
gtcaacttgcgcagccgtgtactagggcattttcaacgcgaccaccaggacgacaaagag
atgcgcctcgcccagcaggttcagcatatcgagtgggaagagaccgctggcgatttaggc
gcccagttgcgtgaggcgcagctggttaaaacgttaatgccgattatgaaccggcagcta
cgcaaacagcgcaagttaactacckggcactgggcggaggaagccgaccaccctgagttg
cttagcggtaacgccctgacccagcctataagcggcacgctgtatggcttgtttcgtaat
gcacgcgaggccaagaatgcattgcgcgccattgctgaagagcagcagctctgccctcgg
gtgttggggctggaaaaaggtaaggggcgctgttttgccaatcaggtgggcaagtgccgt
ggagcgtgcaatggtcaggagtcgatagcagcgcatacccagcgggcgcaaaaagcactc
acccagcttcaggtcaacgtgtggccctggccgggcagtattgctattgaggagaagtca
gcgggcgctacagggtctgcatggcatgtcgttcgccagtggtgctatctaggcagcgcg
accagttttaacaacgcgcaaacgcttgcggaaacgtccgcaagcttcgatgtggatagc
taccgaattttgaaccgtttcttgcgttatccagagcagcacggcttaacggtcactccg
ctctga
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