Halomonas sp. R57-5: HALO2618
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Entry
HALO2618 CDS
T04029
Name
(GenBank) DNA polymerase III subunit epsilon-like protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03030
DNA replication
ham03430
Mismatch repair
ham03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALO2618
03430 Mismatch repair
HALO2618
03440 Homologous recombination
HALO2618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ham03032
]
HALO2618
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO2618
Enzymes [BR:
ham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HALO2618
DNA replication proteins [BR:
ham03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HALO2618
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HALO2618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Rv2179c-like
PAS_4
MASE1
PAS
TPR_MLP1_2
Motif
Other DBs
NCBI-ProteinID:
CEP36300
LinkDB
All DBs
Position
I:2816344..2818407
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AA seq
687 aa
AA seq
DB search
MTRGGLPKRQRLMGLWLLLSGISLLGGAIFAAWLDAQLAPTGVTRIALWLGSFSGGATIF
LVGLLLERMLFTPLRHLQVQLARLVANPDARDEHPPEGWLKGLGPDLRRVRESWRSDRSR
LATAHADGARSAARIRQELETLLQVLETPLLLCDHHRRLMLFNQAAEDFFEGNTGLGLGK
RLEALLPVASLQQVLSQLPNDGSPRELLAPCDDRWLKVILRRVPGSDGETLLTFSDATAS
WSNEMGVRAELADMLTPLRQHTASLTSAADALIQLRNQNDASTSALRQRFERVIQEEGAT
LGDNVAKIGQLLDDMQHQGERLTPMWSNDFWQALDERLDPEHRLITPVGMPAWFKGDAPA
LIALFDSLVKHLNTHLPDSGFEGEICLGNKRVYLDLIWRGKAIPEHELGEWRQQPLNSLP
LTPSVADVLRQHASDIWSLADDNGVYSRLRLPLPAMERVGAPRETAPPRPEFHDFGIADL
PPPDEALASRTLRSLEIVAFDTETTGLELRRGDTVISLGACRVVNARLLASEVFDQKVDP
QRPIPPASTAIHGLTDADVAGAPPLDIVLTRFRDYVGEAVLLAHNAAFDLLAISHKGVAF
DIPIIDTLLISRALDEALDGHDLDSLAQRYDLAFPPGTRHTALGDARVTAELWLALLPRL
EARGVDTLEQLLALQANAFDRQDASAL
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgacccggggcgggctacccaaacgtcagcgcctgatgggtctgtggctactgcttagc
ggcatcagcctgctgggtggggccatttttgccgcttggctggatgcccagctcgcccct
actggggtaacgcgcattgccctttggctaggcagtttctccggtggcgcaacgattttt
ttagtcggcttgctgcttgaacgcatgctgtttaccccgctgcgccatttacaggtgcag
ctggcgcgcttagtcgccaaccccgatgcccgggacgaacatccacccgaaggctggctc
aaagggctgggacccgacctacgccgggtgcgcgaaagctggcgttcggatcgtagccgt
ttagccaccgcccatgcagacggcgcccgcagcgcggcacgcattcgccaagagctggaa
acgctgctgcaagtactcgaaacaccgctgctactgtgcgatcaccaccgccgtctcatg
ctgttcaatcaggcggccgaggacttttttgagggtaacaccgggctagggctgggcaaa
cgcttggaggcgctgctgccggtcgcgagcttacagcaagtgctcagccaactgcccaac
gacggttctcccagagagctgctagcgccctgtgatgatcgttggctcaaggtgatttta
cgccgcgtgccgggtagcgatggcgaaacactgctgacctttagtgacgccaccgcttcc
tggtcgaatgaaatgggcgttagggcggaattggccgatatgctgacaccgctgcgtcag
cataccgccagcctgaccagcgccgccgatgcattgattcaactgcgcaatcaaaacgat
gccagcacgtctgctttgcgccagcgttttgagcgggttatccaagaagaaggcgctaca
ctcggcgacaacgtggcgaaaatcggccaattgctcgacgatatgcaacaccagggcgag
cgcttaacgcctatgtggtcaaacgacttctggcaagcgctggatgagcgccttgacccg
gagcaccgcttgatcaccccggtgggcatgcccgcctggtttaaaggcgacgcacctgcg
ttgatcgcgctgtttgactcgctggtcaaacacctcaatacccatctgcctgacagtggc
tttgaaggtgagatatgcctgggtaacaaacgcgtctacctcgaccttatttggcgtggc
aaggcgatccccgagcatgaactgggggagtggcgccagcagccgctcaactcactgccg
ttgacgcccagcgtcgccgatgtgctacgtcaacacgccagtgacatctggagtctggct
gacgataatggcgtttattcacgcctacgacttcccctacccgccatggaacgcgtcggc
gccccacgcgaaaccgcaccgccgcgccctgaattccatgactttggcattgccgacctg
ccaccaccggatgaagcgctggccagccgaacgctgcgcagcctggaaattgtcgccttt
gatacggaaaccactgggcttgagctgcgccgaggtgacacggtgatcagtcttggcgct
tgccgcgtggtcaacgcacgcttattggccagcgaggtcttcgatcaaaaagttgatccg
cagcgtccaatcccccccgctagcacggcaattcacggcctgaccgatgccgatgtggcc
ggtgcgccgccgctggacattgtacttactcgctttcgtgattatgtcggcgaagcggta
ttactggcccataacgctgcctttgatctgctcgccatcagccacaagggggtcgccttt
gatattcccatcatcgacaccctgttgatttcgcgggcactggacgaagcgctcgatggg
catgatctggatagcctggcccagcgctatgacctggcttttccgccgggcacccgccac
actgcattaggcgatgcccgtgtgaccgctgagctatggctagccctgctgccacggcta
gaagcccgcggcgtcgatacgcttgagcagttgttagcgctgcaagccaacgcctttgat
cgacaggacgccagtgcgttatga
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