Halomonas sp. R57-5: HALO2902
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Entry
HALO2902 CDS
T04029
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO2902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO2902
03009 Ribosome biogenesis [BR:
ham03009
]
HALO2902
Enzymes [BR:
ham01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HALO2902
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HALO2902
Ribosome biogenesis [BR:
ham03009
]
Prokaryotic type
rRNA processing factors
HALO2902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CEP36584
LinkDB
All DBs
Position
I:3126852..3130175
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDY
GADRHGFLPLKEISREYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLVQVWESITTEAAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPEMDTPHY
DVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAMRAEAAVKSVTHNAPAPAS
LQTEEKAPAAAPAPAAQPTPATSEQPSVIGRFIRGFAKLLGSDENTTEATPAPKAETPAP
RKPSERKTTQRSSESRQKSSRSERGDSSARTEQKAEQKADQKTEQRSSTPRPANDDNSEK
RSGPNRTRNRRRHPQQEDANGQDSAKAPRKESQADNSSKDGASKGSTAKESSKESNNSKS
AGQKEPRRDSGAEKASDNQRDETAKQDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQA
QAQDDAPAAAQAPSEAPATEAQAPEAKAATNETPITPEPTSGPESDDRNPAPTADTAQPE
PTAAVEPDTTTEPEAKSAPEQADNVTTTDQPVAENAKARKSTHQRRQPKAAPGETTEDSA
EQQAAPAAEAPLAEANAEPADTEQTGDSQPSASEPVAPEAIEPPAANAVDPAEAIEEAAS
SAPFHSAGSDERQPEASTNVQETGTPSAAESVDAEPSTEEPSSSELKPSAEAKNDEPQNV
EESSVELNNTEESSTEDNSTEKKSSDLEAPAAEAEPQPAQSVANEAPAKEEPAETVNEDM
PKPRRRTRAHNDPREKRKQAQQDTHSE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttattaatgcgacccagcccgaagagctgcgtgtcgctttagttgat
ggacaacgcctttacgatttagacatcgaatccggcgcaagagaacagaaaaaagccaat
atctatcgcggcaaaatcacccgcgtagaaccctccctggaagccgcctttgttgactac
ggtgcggatcgccacggcttcttgcctctgaaagaaatttcccgtgagtactttgtcaaa
gacgtttccgggcgtccaagcattaaagaagtgcttaaagagggccaagaggtcatcgtt
caggttgataaagaggagcgtggcaataaaggcgccgcgctaaccacctttgttagcctt
gcgggccgctttttggtgctgatgccaaacaatccgcgggcgggtggcatttcacgccgc
atcgaaggcgacgagcgcagccagctcaaagacgccatgggccagctgaccgtgcccgat
aaaatgggcctgattgtgcgcaccgctggcatcggtcgtaacccagaagagctacagtgg
gatttggattacctcgttcaggtgtgggaatcgattaccaccgaggctgccaagcgacct
gcccccttcctgatttatcgtgaatccaacgtcatcatccgcgccatgcgcgactatctt
cgtcaggacatcggcgaagtattgatcgacagccccgagattcacgccgaggcgctgggc
tttattcgtcaggtcatgccctcgtatcagcagaagatcaaactctacgcggacgaagtg
ccgctgttctcgcgcttccagattgaatcgcaaatcgaaaccgcctatcagcgtgaagtg
aagctgccttcgggcggctcgattgtcattgatcacactgaagcgctggtttctatcgat
atcaactccgcgcgcgctacccgcggtagcgatattgaagagaccgccctacagaccaac
tctgaagccgccgatgagatcgcccgccagctacgcctgcgcgatattggcggcctggtg
gtgatcgactttatcgacatggggcccgcgcgcaaccagcgtgaagttgaaaaccgcatg
cgcgatgccctaaagctggatcgtgcacgggtacagattggccgcatttcccgctttggc
ctgatggagatgtcccgtcagcgtctacgcccttcactaggtgagaccagtggcgtggtt
tgcccgcgctgtaatggacagggcaccattcgcgatgtgcgctcgctgtcgctctccatc
atgcgcctgattgaagaagaggccatgaaagagaatagcgcacagattcgcgccattctg
ccggtaccggtggccacttacctgctcaatgaaaaacgcagcgtgctggctgatcttgag
tctcgtcagaatgttcgcgtcgtactgctgcccaatcctgaaatggatacgccccactac
gacgtacaacgcctgcgcgacgaccatctggacgaggatgacactcaaagcctttcgagc
tttgaactctcgaccgataccgaagtgggcaaagagccgacacccagctttgtgccaccc
gccatgcgggcagaagcggcggttaaaagcgtcacccacaacgcgccagcacccgcttcg
ctgcaaaccgaagagaaagcgcctgcggctgccccagctcctgcggcccaaccaacaccg
gcgaccagcgagcaacccagcgttattggtcgctttatccgcggtttcgccaaactgctt
ggcagcgacgaaaatacaaccgaagccacaccagcgccaaaggctgaaaccccggcgcca
cgcaagccgagcgagcgtaaaactactcagcgcagcagcgagtcgcggcagaagtcttcg
cgcagcgagcgcggcgatagcagtgccagaactgagcaaaaggctgaacaaaaagccgac
cagaaaactgagcagcgcagcagcacaccgcgcccagccaatgacgacaatagcgaaaag
cgcagcggccctaaccgtacccgcaaccgccgtcgtcatcctcagcaggaggatgccaat
ggtcaagattcggccaaggcacctcgtaaagagtcccaggctgataactcttctaaagac
ggcgcctccaaaggcagtactgccaaagagagctctaaagagagcaacaacagtaaaagc
gcagggcaaaaagagccacgccgtgatagcggtgctgaaaaagcaagcgacaatcagcgc
gatgaaacggctaagcaggacgacggcaagccgaagcgtacccgtaacaacccgcgtaac
cgcacgcgtacccaggcgattaatccccaagcagaagctgagcagttaaagctgcaggcc
caagcccaggatgacgcgccagcagccgcgcaagcgccgagtgaagcacctgctacagaa
gcacaggcaccggaggctaaggcagcgacaaatgagacaccgattactcccgaaccgaca
tcgggaccggaatcggatgatcgtaaccccgcgccaacagccgacaccgctcagccagaa
ccgacagcagctgtagagcccgataccacaacggagcccgaggctaagagtgcgccagag
caagcggacaacgttacaaccaccgaccagcccgtggcagagaacgctaaagcgcgcaag
tcgacgcaccagcgtcgtcagcctaaagcggcacctggggaaaccaccgaggatagcgct
gagcagcaggcagcccccgctgctgaagcgcccctggctgaagccaacgcggagcctgct
gacactgagcaaactggcgatagccagcccagtgctagcgaaccggtagcgcctgaagcc
atcgaaccgcctgcggccaacgctgttgatccagcagaagcaattgaagaggccgcctcc
tctgcgcctttccatagcgctggttcagacgagcgtcagcctgaagcgtcaaccaacgtc
caggaaactggcactcccagtgctgctgagagtgtcgacgctgagccctcaactgaagag
ccatccagcagcgagctaaagccaagcgccgaagcaaaaaacgatgagccacagaacgtt
gaagagagtagcgttgaactgaataatacggaagagagcagtactgaagataacagcact
gaaaagaagagcagcgatctagaagcccctgcggctgaagctgagcctcagcccgctcag
tcggtcgccaacgaagcacctgctaaagaggagcctgcagaaacggttaatgaagatatg
cctaaaccgcgtcgtcgcacccgggcccacaacgacccgcgcgagaagcgtaaacaggcg
cagcaagacacccactccgagtaa
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