Halomonas sp. R57-5: HALO3384
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Entry
HALO3384 CDS
T04029
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ham
Halomonas sp. R57-5
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ham03016
]
HALO3384
Enzymes [BR:
ham01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HALO3384
Transfer RNA biogenesis [BR:
ham03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HALO3384
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
CEP37066
UniProt:
A0A0D6EBB4
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All DBs
Position
I:3679347..3681287
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AA seq
646 aa
AA seq
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MLQNNAMLAQLKQQIRQTTPRAEGVIKATDKGFGFLETDDGESYFVPPPAMKQVIHGDRV
EGVIHENGDKKSIEPEKLIEAGLDRFVARVQKREGRLSVVPDHPSIKNIIKARIKNSLDE
ESIADGDWIVARLVRHPLKADDRAFFAQIDELVAKSDDPAVPWRVTLARHALEQECPDAG
TDWPLMDEGLTREDLTATPFFTIDGEKTRDMDDALHVATRAEGGWQLSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGKDRPALACTLDINADGSMGEY
RFFAANVKSHAKLVYDNVSDWIEGQGDWAPADDIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAQHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIVVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTMMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPSAQNQDTFEAEIMAINRGGMRVRLLENGATAFVPAPLMHSDR
SKVVIDDKEGRIQIEGEERYKLGDPLRVVLTEAREETRSLVAKPAD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagaacaacgccatgcttgcccagctcaagcaacagattcgtcaaaccaccccc
cgtgctgaaggggtgatcaaagccaccgacaaaggtttcgggtttctcgaaaccgacgac
ggtgaatcctatttcgtgccgccgcccgccatgaagcaggtgattcacggtgatcgcgtg
gaaggtgtgattcacgagaacggtgacaaaaagtccattgagccggaaaagctgattgaa
gcgggtcttgatcggtttgtcgcccgggtgcagaagcgcgaaggtcgcctatctgtcgtc
cccgaccatccgtcgattaaaaatattatcaaggcgcggataaagaacagccttgatgaa
gagagcattgctgatggcgattggatcgtcgctcggctggtacgtcatccgctaaaagcc
gacgaccgcgccttctttgcccagattgatgagctggtggctaaaagcgacgaccctgcg
gtgccgtggcgcgttacgctggcacgccatgcgctggaacaagagtgccccgacgcgggc
accgactggccgctgatggatgaaggtctgacccgcgaagacctgaccgctacgcccttc
ttcaccattgatggtgagaagacccgcgatatggacgatgcgctgcacgtggccacccgc
gctgaaggcggctggcagttgagtgtcgcgattgccgaccccactgcttacgtggaagag
ggccatgcggctgatttagaagcccgcacgcgcgcctttaccgtttacctgcctggccag
aacgtcactatgctgccagagcagttggcagatgatctctgctcgctgtgggaaggtaag
gatcgccccgcgctggcctgtacgctggatatcaatgccgacggcagcatgggcgagtat
cgcttttttgcggccaacgttaagtctcacgccaagctcgtttacgacaacgtctccgac
tggatcgaaggccaaggcgattgggcgcccgcagatgatattgccgagcagctcaccgcg
ctgcgtgatttgaccgaggcacgtactgcttggcgtaacgaacacgcgctggtgtttaaa
gaccgccccgactatgtgttcgatctcgatcctgccggtaatgtcttggcggtgcgcacc
gaagagcgccggattgctaaccgcatgatcgaagagtcgatgattgtggccaacgcctgc
tgcgcggacttcctggcccagcatatcggccacggtatctttaacgtgcaccgtgcgttc
gagccggaaaaagccgaagccgcccaggagttcctggcaggtcaggaaattgtggtcgag
cgtgaggcgttgactgagcttgcccgctacaccgagcttaagcgtgcgctggaaagccgc
gatgacgcttggctggatgcgcgtctgcgccgtttccagggcttcaccatgatgtccgca
cagcccggcccgcactttggtttaggcttggctgcctacgctacctggacatcgccgatt
cgtaagtatggcgatatggtcaaccaccgcttgatcaagcgcgtgttgaaaggcgaacag
gcgcccgccgaggctacccagcagctcaccgagcagctgactgagcgtcgccgcctgaac
cgtatggccgaacgtgatgtgaaagattggctctacgtgcgttacctgaccccctcagcg
cagaaccaggacacctttgaggccgagatcatggccatcaaccgtggtggtatgcgcgtt
cgtctgctggaaaatggcgcgacggcgtttgtacctgctcccttgatgcacagtgaccgc
agcaaagtggtcattgatgataaagaggggcgtattcagatcgagggcgaagagcgttat
aagcttggcgatccgctgcgcgtagtgctcaccgaagctcgcgaagagactcgctcgctg
gtggcaaagccagctgattga
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