Halomonas sp. R57-5: HALO4046
Help
Entry
HALO4046 CDS
T04029
Name
(GenBank) Transcription termination factor Rho-ATP-dependent helicase Rho
KO
K03628
transcription termination factor Rho
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO4046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ham03021
]
HALO4046
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO4046
Transcription machinery [BR:
ham03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HALO4046
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HALO4046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
CEP37728
LinkDB
All DBs
Position
I:complement(4426399..4427658)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYISPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSXMDEVIFEEFKGTGNMEAHLDRKLAERRVFPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcactgaactcaagcaaaaaaccgttcccgagctcctcgatatcgcccgtgaa
atgggtattgataacttggcccgttcgcgcaagcaggacatcattttcgccatccttaaa
aaacacgccaaaagtggcgaggatatttacggcgacggtgtgctggaaattcttcaggat
ggcttcggcttcctgcgtagcgctgacagctcctatctcgccggtcccgacgatatctac
atatcgccttcgcagatccgccgtttcaatctgcgcaagggtgactccatttccggcaaa
atccgtccgccgaaggagggtgagcgctacttcgccctgctgaaggtcagtcaaattaac
tttgaccgtccggaaaatgccaagcacaagatcctgtttgagaacttaacgccgctgttc
ccagacgatcgtatgcgtatggagatcggkaacggctccacggaagaccttaccgcgcgg
atcatcgatctaaccgcgccgatcggtaaaggccaacgtggtttgctggtatcgccgccc
aaggcgggtaaaacgctgatgttgcaaaacatcgcgacttccattacgcgcaacaatcca
gagtgtcatctgatcgtactgctgatcgatgagcgccctgaggaagtgaccgaaatgtcg
cgcaccgtgcgtggcgaagtagtggcgtcgaccttcgatgagccgcctgcgcgtcacgtg
caagtggccgaaatggtgatcgagaaagccaagcgcttggttgagcacaagaaagacgtg
gtcatcctgcttgactcgattacccgactagcgcgtgcctacaacaccgtggtacctagc
tccggcaaagtacttaccggtggtgtcgatgcccacgcccttgaaaagccgaaacgcttc
tttggtgcggcgcgtaacatcgaagagggcggcagcttgacgattatcgccacggcgctg
gtcgataccggctccmagatggacgaagtcatcttcgaagagttcaagggtaccggtaat
atggaagcccatctggaccgcaaactggcagagcgtcgcgtattcccggcaatcaatatc
cgtcgcagcggcacccgtcgtgaagacctgctggcttctgaggatgaaatgcagcgcatg
tggattctgcgtaagctgcttaatccgatggaagacaccgccgccactgaattcctgatc
gaccgtctgaaagataccaagaccaatcttgagttctttgaagcgatgaagcgccgctaa
DBGET
integrated database retrieval system
