KEGG   Halomonas sp. R57-5: HALO4111
Entry
HALO4111          CDS       T04029                                 
Name
(GenBank) Exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ham  Halomonas sp. R57-5
Pathway
ham03410  Base excision repair
ham03430  Mismatch repair
ham03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ham00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HALO4111
   03430 Mismatch repair
    HALO4111
   03440 Homologous recombination
    HALO4111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ham03400]
    HALO4111
DNA repair and recombination proteins [BR:ham03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HALO4111
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HALO4111
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HALO4111
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 GGDEF_2
Other DBs
NCBI-ProteinID: CEP37793
UniProt: A0A0D6EDM4
LinkDB
Position
I:complement(4493538..4495334)
AA seq 598 aa
MTSVVDLPHSTTRPRLEPRPVDEALYARAQAEGLSELQARLLASRLPGYSGELQPLIEPS
LRYLAHPEKLADGRRAAERIAQAVAEGEAIGILTDYDVDGIXSHVVIRRTLVELFGVPEG
KLHSLIGHRIHDGYGISLPLVERTLAQKPFPTLVITADCGSSDEPRIARLKAAGIDVVVS
DHHALPIEGPPSSAFACVNPTRDDCEYPDKTIAGCMVAWLLMSLARGVLIEWGALSESXP
KLSPWLSYVALGTVADCVSLGGSPANRAVVNQGLKLINRMDAACWRAMATRLGADSVPFN
AETLAFQMGPRINARSRLDDPYAALHFMLAENDGVANRQLDVLDQDNQSRKAIEADMAAE
ARTLAVSALTADEPAVVVLLEDGHPGVQGIVASRLVQAYGRPALVLTQASAPGMLTGSGR
SIDGLHLRDALQRTFELAPQALPRFGGHSGAAGVGVPRDQLDAFKAAFLQAVGEQLEGRT
LYPRLWTDGELSKAQLSLTTLQEIETLGPYGREFDPPLFEGRFIVEALRPVGADGAHLML
ELSTGPVTCKAIWFRALTPGELPGFSVGDTLHCAYKLNRNRWRGRETLQLMVEHASAI
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgacctcagtcgtcgatttaccccatagcaccacccggccacgcttagagcctcgtccc
gtggacgaggcgctctatgcccgtgcacaagcggaagggttaagcgaactgcaggcgcga
ttgctagcctcccgcttgcctggttacagcggtgagttgcaaccgttaatcgagcccagc
ctgcgttatctggcccacccggagaaactggccgacggtcgccgcgccgctgagcgtatt
gctcaggcggtggcagagggcgaagccatcggcattcttaccgactacgacgtggatggk
atcmcctcccacgtggtgatccggcgcaccctggtggagctgtttggagtcccggaaggc
aagctgcacagcctgattggccaccgtattcatgacggctacggcattagcctgccgctg
gtggaacgcacgctggcgcaaaagccgtttcccaccctggttatcaccgccgactgcggt
agctctgatgagccccgcatcgcacgccttaaggcagcgggtatcgatgtggtggtgagt
gaccaccacgcgctgcccattgaggggccgccaagttcggcatttgcctgcgttaaccct
acccgggatgactgcgagtatcctgataaaaccatcgccggctgtatggtggcgtggcta
ttgatgtcgctcgcccgcggtgtgctgattgagtggggagcgctttcggaatcgmcgccc
aagctgtcgccttggctctcatacgtagcgctgggcacggtagcggattgtgtctcctta
ggcggcagccccgccaaccgcgcggtggtcaatcaagggttaaagctgatcaaccgtatg
gatgcggcgtgctggcgcgctatggccacgcgcttaggcgctgacagcgtgccgtttaac
gccgagacattagcgtttcagatggggccgcgcatcaatgcccgctcacggctggacgac
ccctacgcggcgttgcactttatgctcgccgagaacgatggggtcgccaatcgccagctc
gacgttttggatcaggataaccagtcccgcaaagcgattgaggctgatatggctgccgag
gcgcgtactttggcggtgagtgcgttaaccgctgatgagcccgccgtggtggtactgctg
gaagacgggcaccccggcgtacagggcatcgttgcctcgcggttggtgcaggcctacggg
cgtccagcgctggtgcttacccaggcatcggcaccgggcatgctcaccggctccggccgc
tcgattgacgggctgcacctgcgcgatgccctacaacgtacctttgagcttgctcctcag
gcgttaccgcgctttggcggccatagtggcgcggcaggggtgggcgtgcccagagatcag
cttgacgcctttaaagcggctttcctgcaggcagtgggcgagcagttggaggggcggacg
ctttacccgcgactctggacagatggtgaactttctaaggcgcagctttcgctgaccacc
ttgcaggagatcgaaacgcttggcccctacggacgggaatttgacccgccgctatttgag
gggcgctttattgtcgaagcgctgcgtccggtgggtgccgacggcgcgcacctgatgctg
gagctctccactggcccggtgacctgtaaagcgatctggtttcgcgccctaacgccgggg
gaactgcctgggtttagcgtcggcgatacgctgcactgcgcctataagcttaatcgcaac
cgctggcgcggtcgtgaaacgctgcagctgatggtcgagcacgccagcgctatctaa

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