Halomonas sp. R57-5: HALO4111
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Entry
HALO4111 CDS
T04029
Name
(GenBank) Exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03410
Base excision repair
ham03430
Mismatch repair
ham03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HALO4111
03430 Mismatch repair
HALO4111
03440 Homologous recombination
HALO4111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO4111
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HALO4111
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HALO4111
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HALO4111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
CEP37793
UniProt:
A0A0D6EDM4
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All DBs
Position
I:complement(4493538..4495334)
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AA seq
598 aa
AA seq
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MTSVVDLPHSTTRPRLEPRPVDEALYARAQAEGLSELQARLLASRLPGYSGELQPLIEPS
LRYLAHPEKLADGRRAAERIAQAVAEGEAIGILTDYDVDGIXSHVVIRRTLVELFGVPEG
KLHSLIGHRIHDGYGISLPLVERTLAQKPFPTLVITADCGSSDEPRIARLKAAGIDVVVS
DHHALPIEGPPSSAFACVNPTRDDCEYPDKTIAGCMVAWLLMSLARGVLIEWGALSESXP
KLSPWLSYVALGTVADCVSLGGSPANRAVVNQGLKLINRMDAACWRAMATRLGADSVPFN
AETLAFQMGPRINARSRLDDPYAALHFMLAENDGVANRQLDVLDQDNQSRKAIEADMAAE
ARTLAVSALTADEPAVVVLLEDGHPGVQGIVASRLVQAYGRPALVLTQASAPGMLTGSGR
SIDGLHLRDALQRTFELAPQALPRFGGHSGAAGVGVPRDQLDAFKAAFLQAVGEQLEGRT
LYPRLWTDGELSKAQLSLTTLQEIETLGPYGREFDPPLFEGRFIVEALRPVGADGAHLML
ELSTGPVTCKAIWFRALTPGELPGFSVGDTLHCAYKLNRNRWRGRETLQLMVEHASAI
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacctcagtcgtcgatttaccccatagcaccacccggccacgcttagagcctcgtccc
gtggacgaggcgctctatgcccgtgcacaagcggaagggttaagcgaactgcaggcgcga
ttgctagcctcccgcttgcctggttacagcggtgagttgcaaccgttaatcgagcccagc
ctgcgttatctggcccacccggagaaactggccgacggtcgccgcgccgctgagcgtatt
gctcaggcggtggcagagggcgaagccatcggcattcttaccgactacgacgtggatggk
atcmcctcccacgtggtgatccggcgcaccctggtggagctgtttggagtcccggaaggc
aagctgcacagcctgattggccaccgtattcatgacggctacggcattagcctgccgctg
gtggaacgcacgctggcgcaaaagccgtttcccaccctggttatcaccgccgactgcggt
agctctgatgagccccgcatcgcacgccttaaggcagcgggtatcgatgtggtggtgagt
gaccaccacgcgctgcccattgaggggccgccaagttcggcatttgcctgcgttaaccct
acccgggatgactgcgagtatcctgataaaaccatcgccggctgtatggtggcgtggcta
ttgatgtcgctcgcccgcggtgtgctgattgagtggggagcgctttcggaatcgmcgccc
aagctgtcgccttggctctcatacgtagcgctgggcacggtagcggattgtgtctcctta
ggcggcagccccgccaaccgcgcggtggtcaatcaagggttaaagctgatcaaccgtatg
gatgcggcgtgctggcgcgctatggccacgcgcttaggcgctgacagcgtgccgtttaac
gccgagacattagcgtttcagatggggccgcgcatcaatgcccgctcacggctggacgac
ccctacgcggcgttgcactttatgctcgccgagaacgatggggtcgccaatcgccagctc
gacgttttggatcaggataaccagtcccgcaaagcgattgaggctgatatggctgccgag
gcgcgtactttggcggtgagtgcgttaaccgctgatgagcccgccgtggtggtactgctg
gaagacgggcaccccggcgtacagggcatcgttgcctcgcggttggtgcaggcctacggg
cgtccagcgctggtgcttacccaggcatcggcaccgggcatgctcaccggctccggccgc
tcgattgacgggctgcacctgcgcgatgccctacaacgtacctttgagcttgctcctcag
gcgttaccgcgctttggcggccatagtggcgcggcaggggtgggcgtgcccagagatcag
cttgacgcctttaaagcggctttcctgcaggcagtgggcgagcagttggaggggcggacg
ctttacccgcgactctggacagatggtgaactttctaaggcgcagctttcgctgaccacc
ttgcaggagatcgaaacgcttggcccctacggacgggaatttgacccgccgctatttgag
gggcgctttattgtcgaagcgctgcgtccggtgggtgccgacggcgcgcacctgatgctg
gagctctccactggcccggtgacctgtaaagcgatctggtttcgcgccctaacgccgggg
gaactgcctgggtttagcgtcggcgatacgctgcactgcgcctataagcttaatcgcaac
cgctggcgcggtcgtgaaacgctgcagctgatggtcgagcacgccagcgctatctaa
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