KEGG   Halomonas sp. R57-5: HALO4151
Entry
HALO4151          CDS       T04029                                 
Name
(GenBank) RNA polymerase sigma factor 54, interaction
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
ham  Halomonas sp. R57-5
Pathway
ham02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ham00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HALO4151
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:ham02022]
    HALO4151
Two-component system [BR:ham02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   HALO4151
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_16 AAA AAA_2 bpMoxR AAA_7 HTH_17 DUF6716 AAA_22 Torsin DUF815
Other DBs
NCBI-ProteinID: CEP37833
UniProt: A0A0D6EDR0
LinkDB
Position
I:4540533..4541915
AA seq 460 aa
MHEPSTLPVMVIDDEPHLRITASQTLELAGYTPYCFESAEQALAALTPDFPGVIVSDIRM
PGMDGMALLHELHSRDATLPIILITGHGDISTAVEAMRAGAWDFLEKPFAGDQLLDVVRR
GIEKRQLSLENHRLKAELEVQQAALGPRLVGRTPIISRLAAMIQRISQVEADVLLFGETG
TGKDLVARAIHERSGRRNSPFMAINCGAVPENTIESELFGHEKGAFTGAVERRIGKFEHA
NGGTVFLDEIESMPMALQVKLLRVLQERSVERLGANETVPLNIRVIAATKVDLKTASEEG
HFREDLYYRLNVVTLPLPALRERREDIPLLFQHFAVVAANRSGLEAPTLDSPAIAALLAH
DWPGNVRELRNLAERYVLLGAAFDYRLDALLEGVNADTEEPTLPRQVELFEKSLISQSLS
RYHGRVTDVCRHLGIPRKTFYDKLKKHGLHADDYRHSSEP
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgcatgagccgtcgacgctgccggtcatggtgatcgacgacgaaccgcatctgcggatc
accgccagccaaaccctcgaacttgccggctatacgccctactgctttgaatccgcagaa
caagcgctggcggcgttgacgcctgactttccgggggtcattgtcagcgatattcgcatg
ccggggatggatggcatggcgctgctccatgagctacacagccgcgacgccactctgccg
attattttaatcaccggacacggcgatatttccacagccgtagaagccatgcgcgccggg
gcctgggattttctcgaaaagccgtttgccggtgatcaactgctggatgtggtgcgccgg
ggcattgagaagcgccagctcagcttggaaaaccaccgtcttaaagccgagctggaggtg
cagcaagccgcgctagggccacgactggtgggccgcacaccgatcatttcgcggctggcc
gccatgattcagcgcatcagccaagtcgaagcagatgtactgctgtttggtgagaccggc
accggtaaagatctggttgcccgtgccattcacgaacgcagcgggcggcgtaacagcccc
tttatggcgattaactgcggcgcggtgcccgagaacaccatagagtccgagctgtttggc
cacgaaaaaggcgccttcacaggtgccgtcgaacggcgcatcggcaagttcgagcacgct
aacggtggcacggtgtttttggatgaaattgagtcgatgcccatggcgctgcaagtcaaa
ctgctgcgggtactgcaagagcgcagcgtcgagcggctaggcgccaatgaaaccgtgccg
ctcaatatccgcgtgattgcagccaccaaggtggacctcaaaaccgcgtcagaggaagga
cattttcgtgaagacctttactaccggttaaacgtcgtcaccctgccattgcccgccctg
cgtgaaaggcgggaggacattcccttactgttccaacactttgccgtggtcgctgctaac
cgcagcggactggaagcgccgaccctcgatagccctgcaattgccgctctgctggcccat
gactggcccggcaacgtgcgcgagctacgcaaccttgccgagcgctacgtgctgctgggc
gctgcctttgactatcgtttggatgcgcttctggaaggggtcaacgctgataccgaagag
ccgactctgccgcgccaggtagagctgtttgaaaagagcctgatcagccaatcgctgtcg
cgctaccatggccgggtaaccgacgtctgccgccacttgggcattccacgcaaaacgttt
tacgacaagcttaaaaagcatggtctccatgccgatgactatcgccacagcagcgagccc
tga

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