Halomonas sp. R57-5: HALO4198
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Entry
HALO4198 CDS
T04029
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HALO4198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ham03019
]
HALO4198
03016 Transfer RNA biogenesis [BR:
ham03016
]
HALO4198
Enzymes [BR:
ham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HALO4198
Messenger RNA biogenesis [BR:
ham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HALO4198
Transfer RNA biogenesis [BR:
ham03016
]
Prokaryotic type
tRNA degradation factors
HALO4198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CEP37880
LinkDB
All DBs
Position
I:complement(4597322..4599490)
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AA seq
722 aa
AA seq
DB search
MLKEVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANPSQP
FFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVVC
TVLSTDRNHDPDIAALLGTSAALSISGVPFSGPIGAARVGFNEEKGYFLNPTVEELATSE
LDMVVAGTEKAVLMVESEAKELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQ
AAEENQALKTAMADAFEAKVGDAYRITDKMQRQDALAELKDQAIEQLAADEGEPVNDKFS
KDDVKGAFASLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAIFTRGETQ
AIAVATLGTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRLARR
GVQAMLPSEDTFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLV
KDPDGFAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMELALQQALTA
RLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGAMIRKICEDTGASIDL
DDDGTVRIYAEDKAAAKRAIDTVLAITAEAEIGKLYMGKVVRIADFGAFVNIMPGTDGLV
HISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSMKEITEEEKTAFAAEAAETEA
TI
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggaagtcgctgtgaatccggtaaagaaaacgttccagtacggtcgtagcacc
gtcacgctcgaaaccgggcgtattgctcgccaagccaccggcgctgtcatggttaccatg
gacgacaccgtcgtgctgtgtaccgtggtcgctcgtaaagaggctaacccgagccaaccc
tttttccctctctcggtacactaccaggagaaaacctacgcagtgggcaaaattcctggc
ggcttctttaagcgcgaaggacgacccactgagaaagagacgctgacttcgcggctgatc
gatcgcccgatccgtccgctgttccccaaaggctttatgaacgaagtgcaggtcgtctgt
accgttctctccaccgaccgtaatcacgatccggatattgccgcactgctgggtacttcc
gcagcgctgagcatctctggcgtgccgtttagtggcccgatcggcgcagcccgcgttggt
tttaacgaagagaaaggctacttcctcaacccaaccgttgaagaactggccacctctgag
ctcgacatggtcgtcgccggtactgaaaaagccgtgctgatggttgagtctgaagctaaa
gagctgcttgaagacgaaatgctgggagccgtactgttcggccaccaagagatgcaggta
gcgatcagcgccatcaacgaactggttgctgaagccggtaagccgcgctgggagtggcag
gccgccgaagagaaccaggcgctcaaaaccgctatggccgatgcgtttgaggctaaagtg
ggcgatgcttaccgcatcaccgacaaaatgcagcgccaggatgcactggctgagttgaaa
gaccaggcgattgaacagctggcagccgatgaaggcgaaccggttaacgacaagttcagt
aaagatgacgttaaaggtgcttttgctagcctggaaaaacgcgtggtgcgttcgcgggtt
gtcaaaggcgagccgcgtattgatggtcgcgacaaccagaccgtgcgcccgctggctatc
gaagtcggcgtgctgccaaaagcccacggttcggccatctttacccgtggtgagacccag
gcgatagccgtggcaacgctgggcacgctgcgtgactcacagctaattgaatcactggaa
ggcgagcgtaaagaccgctttatgctgcactacaacttccctccctactcggtaggcgaa
gcgggctttatgggtggccctaagcgtcgtgaaatcggccatggccgcctagcgcgtcgc
ggcgtacaggcgatgctgccatccgaagataccttcccctataccattcgcgtggtctcg
gaaatcaccgagtctaacggctctagctcgatggcttccgtatgtggctcttcgctggcg
ttgatggatgcaggcgtgccgctaaaagcaccggtggcgggtatcgcaatgggtctggta
aaagacccggacggcttcgcggtattgaccgatatcctgggtgatgaagaccacctcggc
gatatggactttaaagtcgcaggttctgaagagggcgttaccgccctgcagatggacatc
aagatcgaaggcatcaacgaagagattatggagctcgcgctgcagcaagcactgaccgcg
cggctgagtattcttgagcagatgaatgtggtgatcagccagagccgtagcgatgtctcc
gacaacgccccgtccatggcaacgattaaaatcgaycccgacaagatccgcgatgtgatc
ggtaaaggcggcgcgatgattcgtaaaatctgcgaagacaccggcgcttcaatcgatctc
gacgacgacggcaccgtacgtatctacgcggaagataaagccgccgccaagcgcgccatt
gacaccgtactggcgattaccgctgaagcggaaatcggcaagctgtatatgggtaaagtg
gtacgcattgctgacttcggcgcgttcgtgaacatcatgccgggtaccgatggcctggtg
cacatctcgcaaatcgttgccgagcgcgttaacaacgtgcgcgacttcttgaacgaaggc
gatgacgtgattgtgaaggtacttgatatcgacaaccgcaaccgcgtgaagctgtcgatg
aaagagatcactgaagaagagaaaaccgctttcgcagcagaagcagcggaaaccgaagcg
acgatttaa
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