Halomonas sp. R57-5: HALO4356
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Entry
HALO4356 CDS
T04029
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HALO4356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ham03021
]
HALO4356
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO4356
Enzymes [BR:
ham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HALO4356
Transcription machinery [BR:
ham03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HALO4356
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HALO4356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Acyl-CoA-dh_C
Motif
Other DBs
NCBI-ProteinID:
CEP38038
LinkDB
All DBs
Position
I:complement(4763019..4764014)
Genome browser
AA seq
331 aa
AA seq
DB search
MQRSVTEFLRPRDIKVEEISAHHARIVLEPFERGFGHTLGNALRRILLSSMPGCAVVEAE
IAGVEHEYSALEGVQEDVIEILLNLKDVAIKMHSRDEAVLTLNKQGPAVVTAGDIALDHS
VEIVNPDHIIAHVNEGAELKIQLKVALGRGYEPADARGSDEETRAIGRLQLDATFSPVRR
VSYSVEAARVEQRTDLDKLIIDLETDGTLDPEEAIRRSAXILQEQLAAFVDLEADKEQEV
EEEEDHVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLNE
IKDVLAARGLSLGMRLENWPPASLKDDKASA
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttcagtgacagagtttctccgtcctcgcgacatcaaggtcgaagaaatcagc
gcacatcacgccagaatcgtgctcgaaccgttcgagcgtggctttggtcacaccctgggg
aatgcacttcgtcgcattctgctttcatctatgcccggctgtgccgtggtagaagctgaa
attgccggcgtcgagcatgaatacagtgcgctcgaaggggtgcaggaagatgtcattgaa
atcctcctgaacttgaaagatgttgcgatcaagatgcacagccgcgatgaggcggtgctc
acgctgaacaagcagggcccagccgtcgtcaccgctggcgacattgcgcttgatcatagc
gtcgaaatcgtcaacccggatcacatcattgcgcacgtcaatgaaggtgccgagctgaaa
attcagcttaaggtagcgctgggtcgtggctacgagccggctgacgcgcgtggctctgat
gaagagacgcgtgccattggccgcctgcagctggatgccaccttcagccctgtccgccgt
gtttcctactcggttgaagccgctcgtgtcgagcagcgcaccgatctcgataagctaatt
atcgatctggaaaccgacggtaccctggatccggaagaggctatccgtcgcagtgcgmcc
atcctgcaagagcagctggccgccttcgtcgacctggaagctgataaagaacaggaagtc
gaagaggaagaggatcatgttgatccaattctattgcgccccgtagacgatcttgagttg
accgttcgcagcgcgaactgcctaaaagccgagaatatttactacatcggtgatctgatt
cagcgcacagaagttgagctgttgaagacaccgaatctcggtaaaaagtctttgaatgaa
attaaagacgtattggcggctcgcggcttgtcccttggcatgcggttggaaaattggcca
ccggcaagcctgaaggacgacaaagcctccgcgtga
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