Halomonas sp. R57-5: HALO4387
Help
Entry
HALO4387 CDS
T04029
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HALO4387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ham03021
]
HALO4387
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO4387
Enzymes [BR:
ham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HALO4387
Transcription machinery [BR:
ham03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HALO4387
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HALO4387
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
CEP38069
LinkDB
All DBs
Position
I:complement(4785566..4789642)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYXFLQQDRSPDERHEIGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMNTEEILAEFFETSVFHIEKSG
FSVELVPSRLRGETATFDIKDGEGNVIVEEGRRITQKHIRQLEKAGLERLDVPMEYLFGK
TLAKDQIDSKTGELICPCNTEITPEVLERMAQGGITLVETLYTNDLDCGSFISDTLKLDA
TNSALEALVEIYRMMRPGEPPTKESAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDT
GSGVLDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDFVIAQASAAVDESNKLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRAXKPLVGTGMERFVARDSGVC
AVANRGGVIDSVDARRXVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKXSRALSIERTQLDE
VRKDLQETYRIAEDATFERLKRTLDGQAVNGGPNLKKGDVLDEDYLDELPRQQWFKLRLQ
DESFNELLAQADEQLEIRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGESVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDARGQQVAEIRDFLGQIYNTQGTRIEDLDSLTDDEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMALFDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtaatggatgtgccttacttgctggcgatccagcttgattcctattacgmcttcctccag
caagatcgttcgcccgacgagcgtcacgagatcggtctgcacgcggcattcaagtccgtg
tttccgattgagagcttctccggcaatgcagcgcttgagtatgtcagctaccgctttggt
acgccggcgttcgatgttaaggagtgccagctgcgcggtgtgacttactccgccccgctg
cgcgtcaaggttcgcttgatcatttatgatcgcgactcctcgaacaaagccattaaagat
attaaagagcaagaagtctacatgggggaaatccccctgatgacggagaacggtaccttt
gttatcaacggtactgagcgggttatcgtatcccagctccaccgctcgcccggtgtgttc
tttgatcacgacaaaggtaagagccactcttccggcaagctgctctactctgcccgagtg
attccttaccgtggctcctggttagacttcgagtttgaccccaaagacaacgtcttcgta
cgtattgaccgtcgccgcaaactgccggcctcggtattgatgcgtgcgctgggtatgaac
accgaagagatcctcgccgagttctttgaaaccagcgtcttccacattgagaaatccggt
ttctctgtggagctggtgccgtcacgcctgcgcggcgaaacggccactttcgacatcaaa
gatggcgaaggtaatgtgatcgttgaagaggggcgtcggattacccagaagcacattcgt
cagcttgaaaaagccggccttgagcgtctggatgtgccgatggagtacctgttcggcaaa
accctggccaaagatcagatcgattccaagaccggcgagctgatctgcccatgtaatacc
gaaatcactcccgaagtgctcgagcgtatggctcagggtggcatcactctggtggaaacg
ctctacactaacgatcttgactgcggttcattcatttccgacaccttgaagctggacgcg
actaactccgcgcttgaagccttggtggaaatctaccgcatgatgcgccccggcgagccg
cccactaaagagtctgccgagacgctgtttaacaacctgttcttctctgaggaccgctac
gacctgtcgggcgttggccgcatgaagttcaaccgtcgcctgcgtcgtgatactgacacc
ggctccggcgtactggatcgtaaagacatcctggatgtgctgcgcgagctgatcaatatt
cgcaacggcttcggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgc
gttggcgagatggctgaaaaccagttccgcgttggcttggtgcgtgtagagcgcgcggtg
aaagagcgtctctccatggccgaaagcgaaggcctgatgccccaagacttgatcaacgcc
aagccggtcgcggcggcggtgaaagagttcttcggttccagccagctttcccagtttatg
gatcagaacaacccgctctcagaggttacccacaagcgtcgtgtgtcagcactcggcccc
ggtggtttgacccgtgagcgtgctggcttcgaagtacgtgacgtacacgccacgcactat
gggcgcctatgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcgctg
gcgacctacagccacaccaacagctacggtttccttgaaacgccgtaccgtaaagtggtt
gatcgtcagttgaccgacgacatcgtccatctctcggcgatcgaagagggcgatttcgtt
atcgcccaggcgtcagcggcggtagatgagtccaacaagctaagcgatgatctggttcag
gtgcgtcaccgcggtgagaccacctttatgcgtcccgagcaagtgacgctgatggatgta
tcaccccgtcaggtcgtctcggtcgcagcggcattgattccgttcctggagcacgatgac
gccaaccgcgccttgatgggctcgaacatgcagcgtcaggcggttcctaccctgcgtgcc
gmcaagccgctggtaggtaccggcatggagcgctttgttgcccgtgactccggtgtctgt
gcggtggcgaatcgtggtggcgtgattgattccgttgacgcgcgtcgtgkggtggtacgg
gttaacgaagatgagatcatcggcggtgaagccggggttgatatctacaacctgaccaaa
tacacccgctcgaaccagaacacttgtatgaaccagcgccccatcgtgcggcctggcgat
aacgtggcgcgtggcgatattctcgccgacggcccgtcggtggatatgggtgacttggcg
ctgggccagaacatgcgcatcgcctttatgccctggaacggctacaacttcgaggactcg
attctgctttccgagcgggttgttcaagaagaccgtttcaccaccattcacattcaggaa
ctgacctgtgtgtctcgtgacaccaagttgggctcagaagaaatcacttctgatattccg
aacgtgggcgagtctgcgctctccaagctggatgaggcgggcgttgtctacatcggtgcc
gaagtcggcccgggcgatattctggtcggtaaagtgacaccgaagggtgaaacccagctg
acgcctgaagagaagctgctacgtgctatcttcggcgagaaagcgtctgacgttaaagat
acctcgctgcgtgccccgacaggcatgaaaggcacggtcatcgacgttcaggtgtttacc
cgtgacggcgttgagaaagmctcccgcgccctgtcgatcgagcgcacccagcttgatgag
gtacgtaaggatctccaagagacttaccgtatcgccgaagatgccacctttgagcgtctc
aagcgtacccttgacggtcaggccgttaacggtggcccgaacctcaagaaaggcgatgtg
ctggacgaggattacctcgacgaactgccgcgtcagcagtggttcaagctgcgtctgcag
gatgagtcgtttaatgagctactggctcaggctgacgaacagctggaaattcgtcgtaaa
gagatggatgagcgctttgaagataagaagcgcaagctgacccagggcgatgacctcgcg
ccgggcgtactgaagatcgtcaaggtctacatggccgtgaagcgtcgcatccagccaggc
gacaagatggccggtcgtcacggtaacaaaggtgttatctcggcgattatgcccatcgaa
gacatgccgtttgacgagaagggcgagtcggttgacgtggtgctaaacccgctgggcgta
ccgtcgcggatgaacgttggtcagatccttgagacgcacctgggcatggcggcgcgtggc
ttgggcgtcaagatcgaagccatgctgcgcgatgcacgcggtcagcaggtcgctgaaatt
cgtgacttcctggggcagatctacaatacccagggtacgcgtattgaagatctcgattcc
ctgaccgacgatgaaattatcgccctggcgaagaacctaaaaggcggtgtgcccatggca
acgccggtgtttgacggtgctaaagagcacgaaatcaagcacctgctgaagctggcggac
attcctgaatcgggtcagatggccctgttcgatggccgtaccggtgacgcttttgaccgt
ccggtcaccgtcggctacatgtatatgttgaagcttaaccacttggtagacgacaagatg
cacgcgcgttctaccggttcttactcgctggttactcagcagcccttgggtggtaaggcg
caattcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagcatacggcgcc
gcttacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttt
aacgtactcgttaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
DBGET
integrated database retrieval system
